Evidence map›Paper›PMID 34042779›Full record

ArticleStudies in health technology and informatics2021

Consolidated EHR Workflow for Endoscopy Quality Reporting.

Shorabuddin Syed, Benjamin Tharian, Hafsa Bareen Syeda, Meredith Zozus, Melody L Greer, Sudeepa Bhattacharyya, Mahanazuddin Syed, Fred Prior

Open access · hybridAbstract read
In one paragraph

Article in Studies in health technology and informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. TAX-Corpus: Taxonomy based Annotations for Colonoscopy Evaluation.Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference) · 2022
    Article
  2. The h-ANN Model: Comprehensive Colonoscopy Concept Compilation Using Combined Contextual Embeddings.Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shorabuddin SyedDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Benjamin TharianDivision of Gastroenterology and Hepatology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Hafsa Bareen SyedaDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Meredith ZozusDepartment of Population Health Sciences, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Melody L GreerDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Sudeepa BhattacharyyaDepartment of Biological Sciences and Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR, USA.
Mahanazuddin SyedDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Fred PriorDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
University of Arkansas for Medical Sciences · USArkansas Biosciences Institute · USThe University of Texas Health Science Center at San Antonio · US

Funding

Expanding Translational Research in ArkansasUL1TR003107 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI JAMES, LAURA P · 2019 to 2023
$21.6M
NCATS NIH HHS UL1 TR003107
6 · The paper itself

Abstract

Although colonoscopy is the most frequently performed endoscopic procedure, the lack of standardized reporting is impeding clinical and translational research. Inadequacies in data extraction from the raw, unstructured text in electronic health records (EHR) pose an additional challenge to procedure quality metric reporting, as vital details related to the procedure are stored in disparate documents. Currently, there is no EHR workflow that links these documents to the specific colonoscopy procedure, making the process of data extraction error prone. We hypothesize that extracting comprehensive colonoscopy quality metrics from consolidated procedure documents using computational linguistic techniques, and integrating it with discrete EHR data can improve quality of screening and cancer detection rate. As a first step, we developed an algorithm that links colonoscopy, pathology and imaging documents by analyzing the chronology of various orders placed relative to the colonoscopy procedure. The algorithm was installed and validated at the University of Arkansas for Medical Sciences (UAMS). The proposed algorithm in conjunction with Natural Language Processing (NLP) techniques can overcome current limitations of manual data abstraction.

Indexed as

Electronic Health RecordsNatural Language ProcessingAlgorithmsColonoscopyWorkflowColonoscopydata integrationelectronic health recordsnatural language processingquality improvement

Identifiers

PMID34042779
PMCPMC9019787
OpenAlexW3164360178

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.