Evidence map›Paper›PMID 34042486›Full record

ArticleMicrobiology resource announcements2021

High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534.

Jason E Stajich, Andrea L Vu, Howard S Judelson, Gregory M Vogel, Michael A Gore, Maryn O Carlson, Nicholas Devitt, Jennifer Jacobi, Joann Mudge, Kurt H Lamour and 1 more

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Microbiology resource announcements · 2023
    Article
  8. Chromosome-level assembly of theFrontiers in microbiology · 2022
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jason E StajichDepartment of Microbiology and Plant Pathology, University of California, Riverside, California, USA.
Andrea L VuDepartment of Microbiology and Plant Pathology, University of California, Riverside, California, USA.
Howard S JudelsonDepartment of Microbiology and Plant Pathology, University of California, Riverside, California, USA.
Gregory M VogelSchool of Integrative Plant Science, Cornell University, Geneva, New York, USA.
Michael A GoreSchool of Integrative Plant Science, Cornell University, Geneva, New York, USA.
Maryn O CarlsonSchool of Integrative Plant Science, Cornell University, Geneva, New York, USA.
Nicholas DevittNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Jennifer JacobiNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Joann MudgeNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Kurt H LamourDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, Tennessee, USA.
Christine D SmartSchool of Integrative Plant Science, Cornell University, Geneva, New York, USA.

Funding

Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
Canadian Institute for Advanced Research (ICRA)HHS | National Institutes of Health (NIH) S10-OD016290National Science Foundation (NSF) DBI 1429826National Science Foundation (NSF) DEB 1441715National Science Foundation (NSF) IOS-1753749New York State Department of Agriculture and Markets C00237GGNIH HHS S10 OD016290USDA | National Institute of Food and Agriculture (NIFA) CA-R-PPA-211 5062-H
6 · The paper itself

Abstract

The oomycete Phytophthora capsici is a destructive pathogen of a wide range of vegetable hosts, especially peppers and cucurbits. A 94.17-Mb genome assembly was constructed using PacBio and Illumina data and annotated with support from transcriptome sequencing (RNA-Seq) reads.

Identifiers

PMID34042486
PMCPMC8201633

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.