Evidence map›Paper›PMID 34040136›Full record

ArticleScientific reports2021

Assessment of closely related Mycobacterium tuberculosis variants with different transmission success and in vitro infection dynamics.

Estefanía Abascal, Charlotte Genestet, Ana Valera, Marta Herranz, Miguel Martinez-Lirola, Patricia Muñoz, Oana Dumitrescu, Darío García de Viedma

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Evaluation of the role ofMicrobiology spectrum · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Estefanía AbascalServicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañón, C/Dr. Esquerdo 46, 28007, Madrid, Spain.
Charlotte GenestetCIRI - Centre International de Recherche en Infectiologie, Ecole Normale Supérieure de Lyon, Inserm U1111, CNRS UMR5308, Université Claude Bernard Lyon-1, 69007, Lyon, France.
Ana ValeraServicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañón, C/Dr. Esquerdo 46, 28007, Madrid, Spain.
Marta HerranzServicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañón, C/Dr. Esquerdo 46, 28007, Madrid, Spain.
Miguel Martinez-LirolaComplejo Hospitalario Torrecárdenas, Almería, Spain.
Patricia MuñozServicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañón, C/Dr. Esquerdo 46, 28007, Madrid, Spain.
Oana DumitrescuCIRI - Centre International de Recherche en Infectiologie, Ecole Normale Supérieure de Lyon, Inserm U1111, CNRS UMR5308, Université Claude Bernard Lyon-1, 69007, Lyon, France.
Darío García de ViedmaServicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañón, C/Dr. Esquerdo 46, 28007, Madrid, Spain. dgviedma2@gmail.com.
Hospital General Universitario Gregorio Marañón · ESCentre International de Recherche en Infectiologie · FRCentro de Investigación Biomédica en Red de Enfermedades Respiratorias · ESComplejo Hospitalario Torrecárdenas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole genome sequencing (WGS) is able to differentiate closely related Mycobacterium tuberculosis variants within the same transmission cluster. Our aim was to evaluate if this higher discriminatory power may help identify and characterize more actively transmitted variants and understand the factors behind their success. We selected a robust MIRU-VNTR-defined cluster from Almería, Spain (22 cases throughout 2003-2019). WGS allowed discriminating, within the same epidemiological setting, between a successfully transmitted variant and seven closely related variants that did not lead to secondary cases, or were involved in self-limiting transmission (one single secondary case). Intramacrophagic growth of representative variants was evaluated in an in vitro infection model using U937 cells. Intramacrophage multiplication ratios (CFUs at Day 4/CFUs at Day 0) were higher for the actively transmitted variant (range 5.3-10.7) than for the unsuccessfully transmitted closely related variants (1.5-3.95). Two SNPs, mapping at the DNA binding domain of DnaA and at kdpD, were found to be specific of the successful variant.

Indexed as

Models, TheoreticalPolymorphism, Single NucleotideCell LineHumansMacrophagesMycobacterium tuberculosisTuberculosisWhole Genome Sequencing

Identifiers

PMID34040136
PMCPMC8155013
OpenAlexW3138619780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.