Evidence map›Paper›PMID 34040055›Full record

ArticleScientific reports2021

Transcriptional analysis of the response of C. elegans to ethanol exposure.

Mark G Sterken, Marijke H van Wijk, Elizabeth C Quamme, Joost A G Riksen, Lucinda Carnell, Laura D Mathies, Andrew G Davies, Jan E Kammenga, Jill C Bettinger

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Studying the mechanisms of neurodegeneration:Frontiers in cellular neuroscience · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mark G Sterken *Laboratory of Nematology, Wageningen University and Research, 6708 PB, Wageningen, The Netherlands.
Marijke H van Wijk *Laboratory of Nematology, Wageningen University and Research, 6708 PB, Wageningen, The Netherlands.
Elizabeth C QuammeDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Box 980613, Richmond, VA, 23298, USA.
Joost A G RiksenLaboratory of Nematology, Wageningen University and Research, 6708 PB, Wageningen, The Netherlands.
Lucinda CarnellDepartment of Biological Sciences, Central Washington University, Ellensburg, WA, 98926, USA.
Laura D MathiesDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Box 980613, Richmond, VA, 23298, USA.
Andrew G DaviesDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Box 980613, Richmond, VA, 23298, USA.
Jan E KammengaLaboratory of Nematology, Wageningen University and Research, 6708 PB, Wageningen, The Netherlands.
Jill C BettingerDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Box 980613, Richmond, VA, 23298, USA. jill.bettinger@vcuhealth.org.
Virginia Commonwealth University · USWageningen University & Research · NLCentral Washington University · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Identification of natural variants that influence responses to ethanol in C. elegansR01AA026658 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI BETTINGER, JILL C, KAMMENGA, JAN · 2018 to 2022
$1.7M
NIAAA NIH HHS R01 AA026658NIH HHS P40 OD010440
6 · The paper itself

Abstract

Ethanol-induced transcriptional changes underlie important physiological responses to ethanol that are likely to contribute to the addictive properties of the drug. We examined the transcriptional responses of Caenorhabditis elegans across a timecourse of ethanol exposure, between 30 min and 8 h, to determine what genes and genetic pathways are regulated in response to ethanol in this model. We found that short exposures to ethanol (up to 2 h) induced expression of metabolic enzymes involved in metabolizing ethanol and retinol, while longer exposure (8 h) had much more profound effects on the transcriptome. Several genes that are known to be involved in the physiological response to ethanol, including direct ethanol targets, were regulated at 8 h of exposure. This longer exposure to ethanol also resulted in the regulation of genes involved in cilia function, which is consistent with an important role for the effects of ethanol on cilia in the deleterious effects of chronic ethanol consumption in humans. Finally, we found that food deprivation for an 8-h period induced gene expression changes that were somewhat ameliorated by the presence of ethanol, supporting previous observations that worms can use ethanol as a calorie source.

Indexed as

Caenorhabditis elegansEthanolTranscriptomeAnimalsCaenorhabditis elegans ProteinsCiliaFood DeprivationGene Expression ProfilingGene Expression RegulationTranscription, GeneticCaenorhabditis elegans ProteinsEthanol

Identifiers

PMID34040055
PMCPMC8155136
OpenAlexW3165625639

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.