Evidence map›Paper›PMID 34039603›Full record

ArticleScience advances2021

Multiple integrated metabolic strategies allow foraminiferan protists to thrive in anoxic marine sediments.

Fatma Gomaa, Daniel R Utter, Christopher Powers, David J Beaudoin, Virginia P Edgcomb, Helena L Filipsson, Colleen M Hansel, Scott D Wankel, Ying Zhang, Joan M Bernhard

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 76 citations in OpenAlex.

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  14. Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Fatma GomaaDepartment of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA. jbernhard@whoi.edu fgomaa@whoi.edu.ORCID 0000-0001-5697-7118
Daniel R UtterDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0003-3322-7108
Christopher PowersDepartment of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, Kingston, RI 02881, USA.ORCID 0000-0001-5770-156X
David J BeaudoinDepartment of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.ORCID 0000-0001-6270-9769
Virginia P EdgcombDepartment of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.ORCID 0000-0001-6805-381X
Helena L FilipssonLund University, Department of Geology, Lund, Sweden.ORCID 0000-0001-7200-8608
Colleen M HanselDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.ORCID 0000-0002-3506-7710
Scott D WankelDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.ORCID 0000-0002-7683-0225
Ying ZhangDepartment of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, Kingston, RI 02881, USA.ORCID 0000-0001-8759-0194
Joan M BernhardDepartment of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA. jbernhard@whoi.edu fgomaa@whoi.edu.ORCID 0000-0003-2121-625X
Woods Hole Oceanographic Institution · USHarvard University · USUniversity of Rhode Island · USLund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oceanic deoxygenation is increasingly affecting marine ecosystems; many taxa will be severely challenged, yet certain nominally aerobic foraminifera (rhizarian protists) thrive in oxygen-depleted to anoxic, sometimes sulfidic, sediments uninhabitable to most eukaryotes. Gene expression analyses of foraminifera common to severely hypoxic or anoxic sediments identified metabolic strategies used by this abundant taxon. In field-collected and laboratory-incubated samples, foraminifera expressed denitrification genes regardless of oxygen regime with a putative nitric oxide dismutase, a characteristic enzyme of oxygenic denitrification. A pyruvate:ferredoxin oxidoreductase was highly expressed, indicating the capability for anaerobic energy generation during exposure to hypoxia and anoxia. Near-complete expression of a diatom's plastid genome in one foraminiferal species suggests kleptoplasty or sequestration of functional plastids, conferring a metabolic advantage despite the host living far below the euphotic zone. Through a unique integration of functions largely unrecognized among "typical" eukaryotes, benthic foraminifera represent winning microeukaryotes in the face of ongoing oceanic deoxygenation.

Identifiers

PMID34039603
PMCPMC8153729
OpenAlexW3164089479

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.