Evidence map›Paper›PMID 34039364›Full record

ArticleMalaria journal2021

Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis.

Fehintola V Ajogbasile, Adeyemi T Kayode, Paul E Oluniyi, Kazeem O Akano, Jessica N Uwanibe, Benjamin B Adegboyega, Courage Philip, Oluwagboadurami G John, Philomena J Eromon, George Emechebe and 11 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  16. Evidence of a Recent Bottleneck inPathogens (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 1 country.

Fehintola V Ajogbasile *African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Adeyemi T Kayode *African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Paul E OluniyiAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Kazeem O AkanoAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Jessica N UwanibeAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Benjamin B AdegboyegaAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Courage PhilipAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Oluwagboadurami G JohnDepartment of Biological Sciences, Covenant University, Ota, Nigeria.
Philomena J EromonAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
George EmechebeDepartment of Paediatrics, Imo State University Teaching Hospital, Orlu, Nigeria.
Finimo FinimoDepartment of Paediatrics, Federal Medical Centre, Yenagoa, Nigeria.
Nnenna OgbulaforCase Management Unit, National Malaria Elimination Programme, Federal Ministry of Health, Abuja, Nigeria.
Nma JiyaDepartment of Paediatrics, Uthman Dan Fodio University, Sokoto, Nigeria.
Uche OkaforDepartment of Paediatrics, University of Nigeria Teaching Hospital, University of Nigeria, Nsukka, Nigeria.
Jose AmbeDepartment of Paediatrics, University of Maiduguri, Maiduguri, Nigeria.
Robinson D WammandaDepartment of Paediatrics, Ahmadu Bello University, Zaria, Nigeria.
Stephen OgucheDepartment of Paediatrics, University of Jos Teaching Hospital, University of Jos, Jos, Nigeria.
Olugbenga A MokuoluDepartment of Paediatrics and Child Health, University of Ilorin, Ilorin, Nigeria.
Akintunde SowunmiInstitute of Medical Research and Training, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Onikepe A FolarinAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria.
Christian T HappiAfrican Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Nigeria. happic@run.edu.ng.ORCID http://orcid.org/0000-0002-3056-6705
Redeemer's University · NGAhmadu Bello University · NGCovenant University · NGFederal Medical Centre · NGFederal Ministry of Health · NGImo State University Teaching Hospital · NGUniversity of Ibadan · NGUniversity of Ilorin · NGUniversity of Jos · NGUniversity of Maiduguri · NGUniversity of Nigeria · NGUsmanu Danfodiyo University · NG

Funding

Utilize Microbial Metagenomics for Viral Pathogen CharacterizationU54HG007480 · NHGRI · REDEEMER'S UNIVERSITY · PI HAPPI, CHRISTIAN T. · 2017 to 2022
$5.5M
Host and Microbial Genetic Determinants of Febrile Illness in West AfricaU01HG007480 · NHGRI · REDEEMER'S UNIVERSITY · PI HAPPI, CHRISTIAN T. · 2013 to 2016
$1.6M
National Institute of Allergy and Infectious Diseases U01HG007480National Institute of Allergy and Infectious Diseases U54HG007480NHGRI NIH HHS U01 HG007480NHGRI NIH HHS U54 HG007480World Bank Group ACE019
6 · The paper itself

Abstract

backgroundMalaria remains a public health burden especially in Nigeria. To develop new malaria control and elimination strategies or refine existing ones, understanding parasite population diversity and transmission patterns is crucial.

methodsIn this study, characterization of the parasite diversity and structure of Plasmodium falciparum isolates from 633 dried blood spot samples in Nigeria was carried out using 12 microsatellite loci of P. falciparum. These microsatellite loci were amplified via semi-nested polymerase chain reaction (PCR) and fragments were analysed using population genetic tools.

resultsEstimates of parasite genetic diversity, such as mean number of different alleles (13.52), effective alleles (7.13), allelic richness (11.15) and expected heterozygosity (0.804), were high. Overall linkage disequilibrium was weak (0.006, P < 0.001). Parasite population structure was low (Fst: 0.008-0.105, AMOVA: 0.039).

conclusionThe high level of parasite genetic diversity and low population structuring in this study suggests that parasite populations circulating in Nigeria are homogenous. However, higher resolution methods, such as the 24 SNP barcode and whole genome sequencing, may capture more specific parasite genetic signatures circulating in the country. The results obtained can be used as a baseline for parasite genetic diversity and structure, aiding in the formulation of appropriate therapeutic and control strategies in Nigeria.

Indexed as

Genetic VariationMicrosatellite RepeatsChildChild, PreschoolDried Blood Spot TestingFemaleHumansInfantLinkage DisequilibriumMalaria, FalciparumMaleNigeriaPlasmodium falciparumGenetic diversityMalariaMicrosatelliteNigeriaPlasmodium falciparum

Identifiers

PMID34039364
PMCPMC8152046
OpenAlexW3165874530

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.