Evidence map›Paper›PMID 34038724›Full record

ArticleCell reports2021

ELAVL1 primarily couples mRNA stability with the 3' UTRs of interferon-stimulated genes.

Katherine Rothamel, Sarah Arcos, Byungil Kim, Clara Reasoner, Samantha Lisy, Neelanjan Mukherjee, Manuel Ascano

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 88 citations in OpenAlex.

  1. SFRP2Molecular carcinogenesis · 2026
    Article
  2. Article
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  4. Endothelial Elavl1 Is Required for CD8 T-Cell Persistence in Atherosclerosis.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katherine RothamelDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Sarah ArcosDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Byungil KimDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Clara ReasonerDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Samantha LisyDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Neelanjan MukherjeeDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Manuel AscanoDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA. Electronic address: manuel.ascano@vanderbilt.edu.
Vanderbilt University · USUniversity of Colorado Denver · US

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
TRAINING PROGRAM IN CELLULAR, BIOCHEMICAL, &MOLECULAR ST32GM008554 · NIGMS · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 1995 to 2020
$7.4M
Chemistry-Biology Interface Training GrantT32GM065086 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, SULIKOWSKI, GARY ALLEN · 2002 to 2022
$7.0M
Deciphering Post-transcriptional gene regulatory networks in cellular stress and innate immunityR35GM119569 · NIGMS · VANDERBILT UNIVERSITY · PI ASCANO, MANUEL · 2016 to 2025
$4.0M
Vanderbilt Chemical Biology Interface Training ProgramT32GM149371 · NIGMS · VANDERBILT UNIVERSITY · PI Lars Plate · 2023 to 2026
$1.7M
NCATS NIH HHS UL1 TR002243NIGMS NIH HHS R35 GM119569NIGMS NIH HHS T32 GM008554NIGMS NIH HHS T32 GM065086NIGMS NIH HHS T32 GM149371
6 · The paper itself

Abstract

Upon pathogen detection, the innate immune system triggers signaling events leading to upregulation of pro-inflammatory and anti-microbial mRNA transcripts. RNA-binding proteins (RBPs) interact with these critical mRNAs and regulate their fates at the post-transcriptional level. One such RBP is ELAVL1. Although significant progress has been made in understanding how embryonic lethal vision-like protein 1 (ELAVL1) regulates mRNAs, its target repertoire and binding distribution within an immunological context remain poorly understood. We overlap four high-throughput approaches to define its context-dependent targets and determine its regulatory impact during immune activation. ELAVL1 transitions from binding overwhelmingly intronic sites to 3' UTR sites upon immune stimulation of cells, binding previously and newly expressed mRNAs. We find that ELAVL1 mediates the RNA stability of genes that regulate pathways essential to pathogen sensing and cytokine production. Our findings reveal the importance of examining RBP regulatory impact under dynamic transcriptomic events to understand their post-transcriptional regulatory roles within specific biological circuitries.

Indexed as

3' Untranslated RegionsELAV-Like Protein 1HumansInterferonsRNA, Messenger3' Untranslated RegionsELAV-Like Protein 1InterferonsRNA, Messenger3′ UTRbinding siteELAVL1HuRinnate immunityRNA-binding proteinRNA stability

Identifiers

PMID34038724
PMCPMC8225249
OpenAlexW3164251784

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.