Evidence map›Paper›PMID 34037766›Full record

ArticleThe Journal of infectious diseases2022

Cellular Activation, Differentiation, and Proliferation Influence the Dynamics of Genetically Intact Proviruses Over Time.

Bethany A Horsburgh, Bonnie Hiener, Katie Fisher, Eunok Lee, Hannah Morgan, John-Sebastian Eden, Susanne von Stockenstrom, Lina Odevall, Jeffrey M Milush, Rebecca Hoh and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 4 countries.

Bethany A HorsburghCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.
Bonnie HienerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.
Katie FisherCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.
Eunok LeeCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.
Hannah MorganSydney School of Public Health, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales,Australia.
John-Sebastian EdenCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.ORCID 0000-0003-1374-3551
Susanne von StockenstromDepartment of Microbiology, Tumor, and Cell Biology, Karolinska Institutet, Stockholm,Sweden.
Lina OdevallDepartment of Microbiology, Tumor, and Cell Biology, Karolinska Institutet, Stockholm,Sweden.
Jeffrey M MilushDepartment of Medicine, University of California San Francisco, San Francisco, California,USA.
Rebecca HohDepartment of Medicine, University of California San Francisco, San Francisco, California,USA.
Rémi FromentinCentre de Recherche du Centre Hospitalier de l'Université de Montréal (CHUM) and Department of Microbiology, Infectiology and Immunology , Université de Montréal, Montréal, Canada.
Nicolas ChomontCentre de Recherche du Centre Hospitalier de l'Université de Montréal (CHUM) and Department of Microbiology, Infectiology and Immunology , Université de Montréal, Montréal, Canada.
Frederick M HechtDepartment of Medicine, University of California San Francisco, San Francisco, California,USA.
Timothy E SchlubSydney School of Public Health, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales,Australia.
Steven G DeeksDepartment of Medicine, University of California San Francisco, San Francisco, California,USA.
Sarah PalmerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales,Australia.
The University of Sydney · AUUniversity of California, San Francisco · USCentre Hospitalier de l’Université de Montréal · CAKarolinska Institutet · SE

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
Delaney AIDS Research Enterprise to Cure HIVUM1AI126611 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, PICKER, LOUIS J. · 2016 to 2020
$27.9M
Delaney AIDS Research Enterprise 1U19AI096109NIAID NIH HHS P30 AI027763NIAID NIH HHS U19 AI096109NIAID NIH HHS UM1 AI126611
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) persists in cells despite antiretroviral therapy; however, the influence of cellular mechanisms such as activation, differentiation, and proliferation upon the distribution of proviruses over time is unclear. To address this, we used full-length sequencing to examine proviruses within memory CD4+ T-cell subsets longitudinally in 8 participants. Over time, the odds of identifying a provirus increased in effector and decreased in transitional memory cells. In all subsets, more activated (HLA-DR-expressing) cells contained a higher frequency of intact provirus, as did more differentiated cells such as transitional and effector memory subsets. The proportion of genetically identical proviruses increased over time, indicating that cellular proliferation was maintaining the persistent reservoir; however, the number of genetically identical proviral clusters in each subset was stable. As such, key biological processes of activation, differentiation, and proliferation influence the dynamics of the HIV reservoir and must be considered during the development of any immune intervention.

Indexed as

HIV-1HIV InfectionsCD4-Positive T-LymphocytesCell ProliferationDNA, ViralHumansPhylogenyProvirusesDNA, Viralcellular differentiationcellular proliferationfull-length sequencingHIV persistenceHIV reservoirHLA-DRmemory T cells

Identifiers

PMID34037766
PMCPMC8974828
OpenAlexW3164897324

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.