Evidence map›Paper›PMID 34035386›Full record

ArticleScientific reports2021

Deep learning for large scale MRI-based morphological phenotyping of osteoarthritis.

Nikan K Namiri, Jinhee Lee, Bruno Astuto, Felix Liu, Rutwik Shah, Sharmila Majumdar, Valentina Pedoia

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. ShapeMed-Knee: A Dataset and Neural Shape Model Benchmark for Modeling 3D Femurs.medRxiv : the preprint server for health sciences · 2024
    Article
  11. Deep learning in rheumatological image interpretation.Nature reviews. Rheumatology · 2024
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Latest advancements in imaging techniques in OA.Therapeutic advances in musculoskeletal disease · 2022
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nikan K NamiriDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Jinhee LeeDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Bruno AstutoDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Felix LiuDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Rutwik ShahDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Sharmila MajumdarDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA.
Valentina PedoiaDepartment of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, 1700 Fourth St, Suite 201, QB3 Building, San Francisco, CA, 94107, USA. valentina.pedoia@ucsf.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osteoarthritis (OA) develops through heterogenous pathophysiologic pathways. As a result, no regulatory agency approved disease modifying OA drugs are available to date. Stratifying knees into MRI-based morphological phenotypes may provide insight into predicting future OA incidence, leading to improved inclusion criteria and efficacy of therapeutics. We trained convolutional neural networks to classify bone, meniscus/cartilage, inflammatory, and hypertrophy phenotypes in knee MRIs from participants in the Osteoarthritis Initiative (n = 4791). We investigated cross-sectional association between baseline morphological phenotypes and baseline structural OA (Kellgren Lawrence grade > 1) and symptomatic OA. Among participants without baseline OA, we evaluated association of baseline phenotypes with 48-month incidence of structural OA and symptomatic OA. The area under the curve of bone, meniscus/cartilage, inflammatory, and hypertrophy phenotype neural network classifiers was 0.89 ± 0.01, 0.93 ± 0.03, 0.96 ± 0.02, and 0.93 ± 0.02, respectively (mean ± standard deviation). Among those with no baseline OA, bone phenotype (OR: 2.99 (95%CI: 1.59-5.62)) and hypertrophy phenotype (OR: 5.80 (95%CI: 1.82-18.5)) each respectively increased odds of developing incident structural OA and symptomatic OA at 48 months. All phenotypes except meniscus/cartilage increased odds of undergoing total knee replacement within 96 months. Artificial intelligence can rapidly stratify knees into structural phenotypes associated with incident OA and total knee replacement, which may aid in stratifying patients for clinical trials of targeted therapeutics.

Indexed as

AgedAged, 80 and overArea Under CurveCross-Sectional StudiesDeep LearningDisease ProgressionFemaleHumansKneeMagnetic Resonance ImagingMaleMiddle AgedOsteoarthritis, KneePhenotypeRadiographic Image Interpretation, Computer-Assisted

Identifiers

PMID34035386
PMCPMC8149826

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.