Evidence map›Paper›PMID 34035302›Full record

ArticleNature communications2021

Activation of Prp28 ATPase by phosphorylated Npl3 at a critical step of spliceosome remodeling.

Fu-Lung Yeh, Shang-Lin Chang, Golam Rizvee Ahmed, Hsin-I Liu, Luh Tung, Chung-Shu Yeh, Leah Stands Lanier, Corina Maeder, Che-Min Lin, Shu-Chun Tsai and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. SRSF1 interactome determined by proximity labeling reveals direct interaction with spliceosomal RNA helicase DDX23.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Fu-Lung YehGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Shang-Lin ChangGenomics Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0001-5241-3315
Golam Rizvee AhmedGenomics Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-5278-1924
Hsin-I LiuGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Luh TungGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Chung-Shu YehGenomics Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-2744-001X
Leah Stands LanierDepartment of Biology, Washington and Lee University, Lexington, VA, USA.
Corina MaederDepartment of Chemistry, Trinity University, San Antonio, TX, USA.ORCID 0000-0003-4439-0410
Che-Min LinGenomics Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0001-5196-6428
Shu-Chun TsaiGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Wan-Yi HsiaoGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Wei-Hau ChangInstitute of Chemistry, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-2612-850X
Tien-Hsien ChangGenomics Research Center, Academia Sinica, Taipei, Taiwan. chang108@gate.sinica.edu.tw.ORCID 0000-0002-1747-4478
Genomics Research Center, Academia Sinica · TWInstitute of Chemistry, Academia Sinica · TWNational Yang Ming Chiao Tung University · TWTrinity University · USWashington and Lee University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Splicing, a key step in the eukaryotic gene-expression pathway, converts precursor messenger RNA (pre-mRNA) into mRNA by excising introns and ligating exons. This task is accomplished by the spliceosome, a macromolecular machine that must undergo sequential conformational changes to establish its active site. Each of these major changes requires a dedicated DExD/H-box ATPase, but how these enzymes are activated remain obscure. Here we show that Prp28, a yeast DEAD-box ATPase, transiently interacts with the conserved 5' splice-site (5'SS) GU dinucleotide and makes splicing-dependent contacts with the U1 snRNP protein U1C, and U4/U6.U5 tri-snRNP proteins, Prp8, Brr2, and Snu114. We further show that Prp28's ATPase activity is potentiated by the phosphorylated Npl3, but not the unphosphorylated Npl3, thus suggesting a strategy for regulating DExD/H-box ATPases. We propose that Npl3 is a functional counterpart of the metazoan-specific Prp28 N-terminal region, which can be phosphorylated and serves as an anchor to human spliceosome.

Indexed as

RNA SplicingAdenosine TriphosphateDEAD-box RNA HelicasesHumansMultiprotein ComplexesMutationNuclear ProteinsPhosphorylationProtein BindingRibonuclease HRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA HelicasesRNA PrecursorsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphateBRR2 protein, S cerevisiaeDEAD-box RNA HelicasesMultiprotein ComplexesNPL3 protein, S cerevisiaeNuclear ProteinsPRP28 protein, S cerevisiaeRibonuclease HRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA HelicasesRNA PrecursorsSaccharomyces cerevisiae Proteins

Identifiers

PMID34035302
PMCPMC8149812
OpenAlexW3164966906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.