Evidence map›Paper›PMID 34035279›Full record

ArticleNature communications2021

A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion.

Carla A Gonçalves, Michael Larsen, Sascha Jung, Johannes Stratmann, Akiko Nakamura, Marit Leuschner, Lena Hersemann, Rashmiparvathi Keshara, Signe Perlman, Lene Lundvall and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 2 pooled it
18.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 2 syntheses or guidelines pooled it, 102 citations in OpenAlex.

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  13. Defined human tri-lineage brain microtissues.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 5 countries.

Carla A GonçalvesThe Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark.
Michael LarsenThe Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark.
Sascha JungCIC bioGUNE-BRTA (Basque Research and Technology Alliance), Derio, Spain.
Johannes StratmannMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Akiko NakamuraThe Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark.
Marit LeuschnerMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Lena HersemannMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Rashmiparvathi KesharaMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Signe PerlmanDepartment of Gynaecology, University Hospital of Copenhagen (Rigshospitalet), Copenhagen, Denmark.
Lene LundvallDepartment of Gynaecology, University Hospital of Copenhagen (Rigshospitalet), Copenhagen, Denmark.
Lea Langhoff ThuesenDepartment of Obstetrics and Gynaecology, Hvidovre University Hospital, Hvidovre, Denmark.
Kristine Juul HareDepartment of Obstetrics and Gynaecology, Hvidovre University Hospital, Hvidovre, Denmark.
Ido AmitThe Weizmann institute, Rehovot, Israel.ORCID 0000-0003-2968-877X
Anne JørgensenDepartment of Growth and Reproduction, Copenhagen University Hospital (Righshospitalet), Copenhagen, Denmark.ORCID 0000-0002-6409-198X
Yung Hae KimMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.ORCID 0000-0002-2932-8689
Antonio Del SolCIC bioGUNE-BRTA (Basque Research and Technology Alliance), Derio, Spain.ORCID 0000-0002-9926-617X
Anne Grapin-BottonThe Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark. botton@mpi-cbg.de.ORCID 0000-0002-1202-5235
Max Planck Institute of Molecular Cell Biology and Genetics · DENovo Nordisk Foundation · DKHvidovre Hospital · DKRigshospitalet · DKCIC bioGUNE · ESCopenhagen University Hospital · DKIkerbasque · ESWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human organogenesis remains relatively unexplored for ethical and practical reasons. Here, we report the establishment of a single-cell transcriptome atlas of the human fetal pancreas between 7 and 10 post-conceptional weeks of development. To interrogate cell-cell interactions, we describe InterCom, an R-Package we developed for identifying receptor-ligand pairs and their downstream effects. We further report the establishment of a human pancreas culture system starting from fetal tissue or human pluripotent stem cells, enabling the long-term maintenance of pancreas progenitors in a minimal, defined medium in three-dimensions. Benchmarking the cells produced in 2-dimensions and those expanded in 3-dimensions to fetal tissue identifies that progenitors expanded in 3-dimensions are transcriptionally closer to the fetal pancreas. We further demonstrate the potential of this system as a screening platform and identify the importance of the EGF and FGF pathways controlling human pancreas progenitor expansion.

Indexed as

OrganogenesisAborted FetusAnimalsCell CommunicationCell Culture TechniquesCell DifferentiationCell LineDatasets as TopicEmbryo, MammalianEpidermal Growth FactorFibroblast Growth FactorsGene Expression Regulation, DevelopmentalHumansMicePancreasPluripotent Stem CellsEpidermal Growth FactorFibroblast Growth Factors

Identifiers

PMID34035279
PMCPMC8149728
OpenAlexW3165139099

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.