Evidence map›Paper›PMID 34035168›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Prespacers formed during primed adaptation associate with the Cas1-Cas2 adaptation complex and the Cas3 interference nuclease-helicase.

Olga Musharova, Sofia Medvedeva, Evgeny Klimuk, Noemi Marco Guzman, Daria Titova, Victor Zgoda, Anna Shiriaeva, Ekaterina Semenova, Konstantin Severinov, Ekaterina Savitskaya

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
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  8. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Olga MusharovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia; O.Musharova@skoltech.ru severik@waksman.rutgers.edu.ORCID 0000-0003-2496-0420
Sofia MedvedevaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0002-7841-0814
Evgeny KlimukInstitute of Molecular Genetics, National Research Centre "Kurchatov Institute," Moscow 123182, Russia.ORCID 0000-0001-5314-038X
Noemi Marco GuzmanCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0002-3789-2095
Daria TitovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0002-8963-8945
Victor ZgodaAdvanced Mass Spectrometry Core Facility, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0002-4532-4274
Anna ShiriaevaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.ORCID 0000-0002-4271-1658
Ekaterina SemenovaWaksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.ORCID 0000-0001-6816-8879
Konstantin SeverinovCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia; O.Musharova@skoltech.ru severik@waksman.rutgers.edu.ORCID 0000-0001-9706-450X
Ekaterina SavitskayaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia.
Skolkovo Institute of Science and Technology · RURutgers, The State University of New Jersey · USKurchatov Institute · RU

Funding

The Function of Small RNA-Based viral Defense System in E. coli - Renewal 1R01GM104071 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI SEMENOVA, EKATERINA · 2013 to 2024
$3.9M
NIGMS NIH HHS R01 GM104071
6 · The paper itself

Abstract

For Type I CRISPR-Cas systems, a mode of CRISPR adaptation named priming has been described. Priming allows specific and highly efficient acquisition of new spacers from DNA recognized (primed) by the Cascade-crRNA (CRISPR RNA) effector complex. Recognition of the priming protospacer by Cascade-crRNA serves as a signal for engaging the Cas3 nuclease-helicase required for both interference and primed adaptation, suggesting the existence of a primed adaptation complex (PAC) containing the Cas1-Cas2 adaptation integrase and Cas3. To detect this complex in vivo, we here performed chromatin immunoprecipitation with Cas3-specific and Cas1-specific antibodies using cells undergoing primed adaptation. We found that prespacers are bound by both Cas1 (presumably, as part of the Cas1-Cas2 integrase) and Cas3, implying direct physical association of the interference and adaptation machineries as part of PAC.

Indexed as

CRISPR-Cas SystemsDNA HelicasesEndonucleasesEscherichia coliEscherichia coli ProteinsDNA HelicasesEndonucleasesEscherichia coli ProteinsCRISPR adaptationCRISPR-CasCRISPR interference

Identifiers

PMID34035168
PMCPMC8179228
OpenAlexW3165609751

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.