Evidence map›Paper›PMID 34034658›Full record

ArticleBMC plant biology2021

RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana.

Nathaniel Perry, Colin D Leasure, Hongyun Tong, Elias M Duarte, Zheng-Hui He

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. microPublication biology · 2024
    Article
  5. Article
  6. Weighted Gene Correlation Network Analysis (WGCNA) ofInternational journal of genomics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nathaniel PerryDepartment of Biology, San Francisco State University, CA, 94132, San Francisco, USA.
Colin D LeasureDepartment of Biology, San Francisco State University, CA, 94132, San Francisco, USA.
Hongyun TongDepartment of Biology, San Francisco State University, CA, 94132, San Francisco, USA.
Elias M DuarteDepartment of Biology, San Francisco State University, CA, 94132, San Francisco, USA.
Zheng-Hui HeDepartment of Biology, San Francisco State University, CA, 94132, San Francisco, USA. zhe@sfsu.edu.ORCID http://orcid.org/0000-0002-0075-4983
San Francisco State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Arabidopsis RUS (ROOT UV-B SENSITIVE) gene family contains six members, each of which encodes a protein containing a DUF647 (domain of unknown function 647) that is commonly found in eukaryotes. Previous studies have demonstrated that RUS1 and RUS2 play critical roles in early seedling development. All six RUS genes are expressed throughout the plant, but little is known about the functional roles of RUS3, RUS4, RUS5 and RUS6.

resultsWe used a reverse-genetic approach to identify knockout mutants for RUS3, RUS4, RUS5 and RUS6. Each mutant was confirmed by direct DNA sequencing and genetic segregation analysis. No visible phenotypic differences were observed in rus3, rus4, or rus5 knockout mutants under standard growth conditions, but rus6 knockout mutants displayed a strong embryo-lethal phenotype. Two independent knockout lines for RUS6 were characterized. The rus6 mutations could only be maintained through a heterozygote, because rus6 homozygous mutants did not survive. Closer examinations of homozygous rus6 embryos from rus6/ + parent plants revealed that RUS6 is required for early embryo development. Loss of RUS6 resulted in embryo lethality, specifically at the mid-globular stage. The embryo-lethality phenotype was complemented by a RUS6::RUS6-GFP transgene, and GFP signal was detected throughout the embryo. Histological analyses with the β-glucuronidase reporter gene driven by the RUS6 promoter showed tissue- and development-specific expression of RUS6, which was highest in floral tissues.

conclusionOur data revealed that RUS6 is essential for early embryo development in Arabidopsis, and that the RUS gene family functions in multiple stages of plant development.

Indexed as

ArabidopsisArabidopsis ProteinsIntracellular Signaling Peptides and ProteinsMutationPhenotypePromoter Regions, GeneticArabidopsis ProteinsAT5G49820 protein, ArabidopsisIntracellular Signaling Peptides and ProteinsArabidopsisComplementationDUF647Embryo DevelopmentRUS Gene Family

Identifiers

PMID34034658
PMCPMC8146622
OpenAlexW3165264794

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.