Evidence map›Paper›PMID 34033654›Full record

ArticlePLoS genetics2021

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria.

Zalak Shah, Myo T Naung, Kara A Moser, Matthew Adams, Andrea G Buchwald, Ankit Dwivedi, Amed Ouattara, Karl B Seydel, Don P Mathanga, Alyssa E Barry and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Understanding the Intransigence of Malaria in Malawi.The American journal of tropical medicine and hygiene · 2022
    Article
  9. Monoclonal antibodies for malaria prevention.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Zalak ShahCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0002-7667-1025
Myo T NaungPopulation Health and Immunity Division, Walter Eliza Hall of Medical Institute for Medical Research, Parkville, Victoria, Australia.ORCID 0000-0001-8595-4310
Kara A MoserInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0002-9247-7388
Matthew AdamsCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0001-7062-903X
Andrea G BuchwaldCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0001-6503-6459
Ankit DwivediInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0001-7294-1975
Amed OuattaraCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0003-1964-7130
Karl B SeydelDepartment of Osteopathic Medical Specialties, College of Osteopathic Medicine, Michigan State University, East Lansing, Michigan, United States of America.ORCID 0000-0001-9859-9549
Don P MathangaUniversity of Malawi College of Medicine, Malaria Alert Centre, Blantyre, Malawi.
Alyssa E BarryPopulation Health and Immunity Division, Walter Eliza Hall of Medical Institute for Medical Research, Parkville, Victoria, Australia.ORCID 0000-0002-1189-2310
David SerreInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0002-2446-9095
Miriam K LauferCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0001-8300-9593
Joana C SilvaInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0001-6502-7026
Shannon Takala-HarrisonCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0003-4674-8500
University of Maryland, Baltimore · USUniversity of Malawi · MWBurnet Institute · AUDeakin University · AU

Funding

Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, OWEN R · 2014 to 2023
$36.5M
The role of monocytes in the pathology of severe malaria.U19AI089683 · NIAID · MICHIGAN STATE UNIVERSITY · PI MATENGENI, ALFRED · 2010 to 2023
$21.4M
Genome-wide sieve analysis and immunological validation to identify targets of protective efficacy in field trials of a whole-organism malaria vaccineR01AI141900 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI CARNEIRO DA SILVA, JOANA · 2019 to 2023
$3.9M
Genome-wide studies to identify markers of artemisinin-resistant malariaR01AI101713 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI HARRISON, SHANNON TAKALA · 2013 to 2016
$1.8M
Identification and validation of molecular markers of piperaquine resistanceR01AI125579 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI HARRISON, SHANNON TAKALA · 2017 to 2021
$1.6M
Mentoring in patient-oriented research in global healthK24AI114996 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI LAUFER, MIRIAM K. · 2016 to 2025
$1.6M
Designing a diversity-covering multiantigen multi-strain vaccineK01HL140285 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI OUATTARA, AMED · 2019 to 2023
$712k
NHLBI NIH HHS K01 HL140285NIAID NIH HHS K24 AI114996NIAID NIH HHS R01 AI101713NIAID NIH HHS R01 AI125579NIAID NIH HHS R01 AI141900NIAID NIH HHS U19 AI089683NIAID NIH HHS U19 AI110820
6 · The paper itself

Abstract

Individuals acquire immunity to clinical malaria after repeated Plasmodium falciparum infections. Immunity to disease is thought to reflect the acquisition of a repertoire of responses to multiple alleles in diverse parasite antigens. In previous studies, we identified polymorphic sites within individual antigens that are associated with parasite immune evasion by examining antigen allele dynamics in individuals followed longitudinally. Here we expand this approach by analyzing genome-wide polymorphisms using whole genome sequence data from 140 parasite isolates representing malaria cases from a longitudinal study in Malawi and identify 25 genes that encode possible targets of naturally acquired immunity that should be validated immunologically and further characterized for their potential as vaccine candidates.

Indexed as

AllelesAdolescentAdultAgingChildChild, PreschoolGenomeHumansInfantInfant, NewbornMalaria, FalciparumMalawiPlasmodium falciparumYoung Adult

Identifiers

PMID34033654
PMCPMC8184011
OpenAlexW3164614100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.