Evidence map›Paper›PMID 34032273›Full record

GuidelineClinical pharmacology and therapeutics2022

Clinical Pharmacogenetics Implementation Consortium Guideline for the Use of Aminoglycosides Based on MT-RNR1 Genotype.

John Henry McDermott, Joshua Wolf, Keito Hoshitsuki, Rachel Huddart, Kelly E Caudle, Michelle Whirl-Carrillo, Peter S Steyger, Richard J H Smith, Neal Cody, Cristina Rodriguez-Antona and 2 more

Open access · bronzeAbstract readPractice Guideline
In one paragraph

Guideline in Clinical pharmacology and therapeutics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 4 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 4 syntheses or guidelines pooled it, 100 citations in OpenAlex.

  1. Guideline
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 3 countries.

John Henry McDermottManchester Centre for Genomic Medicine, St. Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, UK.
Joshua WolfDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Keito HoshitsukiSchool of Pharmacy, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Rachel HuddartDepartment of Biomedical Data Science, Stanford University, Stanford, California, USA.
Kelly E CaudleDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michelle Whirl-CarrilloDepartment of Biomedical Data Science, Stanford University, Stanford, California, USA.
Peter S SteygerTranslational Hearing Center, Biomedical Sciences, Creighton University, National Center for Rehabilitative Auditory Research, VA Portland Health Care System, Portland, Oregon, USA.
Richard J H SmithMolecular Otolaryngology and Renal Research Laboratories, Department of Otolaryngology, Internal Medicine (Nephrology), Pediatrics and Molecular Physiology & Biophysics, University of Iowa, Iowa City, Iowa, USA.
Neal CodyDepartment of Genetics and Genomic Sciences, Ichan School of Medicine at Mount Sinai, New York, New York, USA.
Cristina Rodriguez-AntonaHereditary Endocrine Cancer Group, Human Cancer Genetics Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Teri E KleinDepartment of Biomedical Data Science, Stanford University, Stanford, California, USA.
William G NewmanManchester Centre for Genomic Medicine, St. Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, UK.
Stanford University · USSt. Jude Children's Research Hospital · USSt Mary's Hospital · GBIcahn School of Medicine at Mount Sinai · USSpanish National Cancer Research Centre · ESUniversity of Iowa · USUniversity of Pittsburgh · USVA Portland Health Care System · US

Funding

NONSYNDROMIC HEARING LOSS--A COLLABORATIVE STUDYR01DC002842 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1996 to 2024
$12.7M
NRSA Training CoreTL1TR001858 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RADOMSKI, THOMAS, RUBIO, DORIS M · 2016 to 2025
$11.1M
PharmGKB: pharmacogenomics discovery and implementationU24HG010615 · NHGRI · STANFORD UNIVERSITY · PI TERI Ellen KLEIN, Michelle Whirl-Carrillo · 2020 to 2026
$9.5M
Optimizing Genetic Testing for Deafness for Clinical DiagnosticsR01DC012049 · NIDCD · UNIVERSITY OF IOWA · PI TERRY A BRAUN, Thomas L. Casavant · 2011 to 2026
$8.7M
HAIR CELL RESPONSES TO OTOTOXIC DRUGSR01DC004555 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI STEYGER, PETER STEPHEN · 2001 to 2020
$6.6M
Clinical Pharmacogenetics Implementation Consortium (CPIC)U24HG010135 · NHGRI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CAUDLE, KELLY E., KLEIN, TERI ELLEN · 2018 to 2022
$5.4M
Clinical factors in aminoglycoside-induced ototoxicityR01DC016680 · NIDCD · CREIGHTON UNIVERSITY · PI STEYGER, PETER STEPHEN · 2019 to 2023
$3.3M
Autosomal Dominant Non-Syndromic Hearing Loss - Its Genetic Diagnosis and TreatmentR01DC017955 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 2019 to 2023
$2.6M
Hair cell responses to ototoxic drugsR56DC004555 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI STEYGER, PETER STEPHEN · 2007 to 2007
$385k
American Foundation for Pharmaceutical EducationNCATS NIH HHS TL1 TR001858NHGRI NIH HHS U24 HG010135NHGRI NIH HHS U24 HG010615NIDCD NIH HHS R01 DC002842NIDCD NIH HHS R01 DC004555NIDCD NIH HHS R01 DC012049NIDCD NIH HHS R01 DC016680NIDCD NIH HHS R01 DC017955NIDCD NIH HHS R56 DC004555NIHR BRC IS-BRC-1215-20007PharmGKBRho Chi Society
6 · The paper itself

Abstract

Aminoglycosides are widely used antibiotics with notable side effects, such as nephrotoxicity, vestibulotoxicity, and sensorineural hearing loss (cochleotoxicity). MT-RNR1 is a gene that encodes the 12s rRNA subunit and is the mitochondrial homologue of the prokaryotic 16s rRNA. Some MT-RNR1 variants (i.e., m.1095T>C; m.1494C>T; m.1555A>G) more closely resemble the bacterial 16s rRNA subunit and result in increased risk of aminoglycoside-induced hearing loss. Use of aminoglycosides should be avoided in individuals with an MT-RNR1 variant associated with an increased risk of aminoglycoside-induced hearing loss unless the high risk of permanent hearing loss is outweighed by the severity of infection and safe or effective alternative therapies are not available. We summarize evidence from the literature supporting this association and provide therapeutic recommendations for the use of aminoglycosides based on MT-RNR1 genotype (updates at https://cpicpgx.org/guidelines/ and www.pharmgkb.org).

Indexed as

Pharmacogenomic VariantsAminoglycosidesAnti-Bacterial AgentsClinical Decision-MakingGenotypeHearing Loss, SensorineuralHumansOtotoxicityPatient SafetyPharmacogeneticsPharmacogenomic TestingPredictive Value of TestsRisk AssessmentRisk FactorsRNA, RibosomalAminoglycosidesAnti-Bacterial AgentsRNA, RibosomalRNA, ribosomal, 12S

Identifiers

PMID34032273
PMCPMC8613315
OpenAlexW3165771165

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.