Evidence map›Paper›PMID 34032212›Full record

ArticleeLife2021

Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life.

Raphaël Méheust, Shuo Huang, Rafael Rivera-Lugo, Jillian F Banfield, Samuel H Light

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

  1. TheJournal of bacteriology · 2026
    Article
  2. DNA-utilization loci enable exogenous DNA metabolism in gut Bacteroidales.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. ThebioRxiv : the preprint server for biology · 2025
    Article
  4. Flavin transferase ApbE: From discovery to applications.The Journal of biological chemistry · 2025
    Review
  5. A co-conserved gene pair supportsJournal of bacteriology · 2025
    Article
  6. A co-conserved gene pair supportsbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Microorganisms · 2022
    Article
  17. Article
  18. Stickland metabolism in the gut.Nature microbiology · 2022
    Article
  19. eLife · 2022
    Article
  20. RibU is an essential determinant ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Raphaël Méheust *Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-4847-426X
Shuo Huang *Duchossois Family Institute, University of Chicago, Chicago, United States.
Rafael Rivera-LugoDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-2346-2297
Jillian F BanfieldDepartment of Earth and Planetary Science, University of California, Berkeley, Berkeley, United States.
Samuel H LightDuchossois Family Institute, University of Chicago, Chicago, United States.ORCID 0000-0002-8074-1348
Planetary Science Institute · USUniversity of Chicago · USUniversity of California, Berkeley · US

Funding

Electrogenic metabolism in host-associated microbial communities andpathogenesisK22AI144031 · NIAID · UNIVERSITY OF CHICAGO · PI LIGHT, SAMUEL · 2020 to 2021
$268k
NIAID NIH HHS K22 AI144031
6 · The paper itself

Abstract

Disparate redox activities that take place beyond the bounds of the prokaryotic cell cytosol must connect to membrane or cytosolic electron pools. Proteins post-translationally flavinylated by the enzyme ApbE mediate electron transfer in several characterized extracytosolic redox systems but the breadth of functions of this modification remains unknown. Here, we present a comprehensive bioinformatic analysis of 31,910 prokaryotic genomes that provides evidence of extracytosolic ApbEs within ~50% of bacteria and the involvement of flavinylation in numerous uncharacterized biochemical processes. By mining flavinylation-associated gene clusters, we identify five protein classes responsible for transmembrane electron transfer and two domains of unknown function (DUF2271 and DUF3570) that are flavinylated by ApbE. We observe flavinylation/iron transporter gene colocalization patterns that implicate functions in iron reduction and assimilation. We find associations with characterized and uncharacterized respiratory oxidoreductases that highlight roles of flavinylation in respiratory electron transport chains. Finally, we identify interspecies gene cluster variability consistent with flavinylation/cytochrome functional redundancies and discover a class of 'multi-flavinylated proteins' that may resemble multi-heme cytochromes in facilitating longer distance electron transfer. These findings provide mechanistic insight into an important facet of bacterial physiology and establish flavinylation as a functionally diverse mediator of extracytosolic electron transfer.

Indexed as

Protein Processing, Post-TranslationalBacteriaCytosolDinitrocresolsOxidation-Reduction4,6-dinitro-o-cresolDinitrocresolsbiochemistrycellular respirationchemical biologyextracellular microbial physiologynoneredox biochemistry

Identifiers

PMID34032212
PMCPMC8238504
OpenAlexW3164586072

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.