Evidence map›Paper›PMID 34031553›Full record

ArticleBone marrow transplantation2021

T cell receptor beta locus sequencing early post-allogeneic stem cell transplant identifies patients at risk of initial and recurrent cytomegalovirus infection.

James A Kuzich, Yamuna Kankanige, Jerick Guinto, Georgina Ryland, Michelle McBean, Eric Wong, Rachel Koldej, Jenny Collins, David Westerman, David Ritchie and 1 more

Abstract read
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In one paragraph

Article in Bone marrow transplantation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

James A KuzichDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. jamie.kuzich@petermac.org.ORCID http://orcid.org/0000-0002-3657-8010
Yamuna KankanigeDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Jerick GuintoDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Georgina RylandDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Michelle McBeanDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Eric WongUniversity of Melbourne, Parkville, VIC, Australia.
Rachel KoldejUniversity of Melbourne, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-1627-8934
Jenny CollinsClinical Haematology, Peter MacCallum Cancer Centre & the Royal Melbourne Hospital, Melbourne, VIC, Australia.
David WestermanDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
David RitchieUniversity of Melbourne, Parkville, VIC, Australia.
Piers BlomberyDepartment of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
The Royal Melbourne Hospital · AUPeter MacCallum Cancer Centre · AUThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of patients at risk of initial & recurrent cytomegalovirus (CMV) reactivation following allogeneic stem cell transplant (alloSCT) may help guide prophylactic strategies. T-cell receptor beta (TRB) deep sequencing was used to identify and enumerate the T-cell repertoire harbouring TRB sequences with annotated specificity to CMV (pubCMVrep), as well as the overall T-cell receptor (TCR) repertoire diversity at day +30 & day +60 post-alloSCT for 65 patients. T-cells harbouring TRB sequences with annotated specificity for CMV were identifiable in all patients. 56% of patients required CMV treatment and 23% of the cohort developed recurrent CMV. PubCMVrep size at day +30 was not associated with reactivation, however amongst patients with antecedent CMV viremia a low day +60 pubCMVrep was associated with a greater incidence of recurrent CMV (75% vs. 21%, HR 6.16, 95% CI 1.29-29.40, P = 0.0008). Moreover, patients with high pubCMVrep only developed recurrent CMV in the setting of GVHD. Low TCR diversity at day +30 was associated with a greater incidence of initial CMV reactivation (71% vs. 22%, HR 5.39, 95% CI 1.70-17.09, p = 0.0002). pubCMVrep and TCR diversity are promising biomarkers to identify patients at risk of initial & recurrent CMV who may benefit from novel prophylactic strategies.

Indexed as

Cytomegalovirus InfectionsHematopoietic Stem Cell TransplantationCytomegalovirusHumansReceptors, Antigen, T-CellStem Cell TransplantationTransplantation, HomologousVirus ActivationReceptors, Antigen, T-Cell

Identifiers

PMID34031553
OpenAlexW3164819643

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.