Evidence map›Paper›PMID 34031444›Full record

ArticleScientific reports2021

Molecular model of a sensor of two-component signaling system.

Yury L Ryzhykau, Philipp S Orekhov, Maksim I Rulev, Alexey V Vlasov, Igor A Melnikov, Dmytro A Volkov, Mikhail Yu Nikolaev, Dmitrii V Zabelskii, Tatiana N Murugova, Vladimir V Chupin and 12 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  3. I-Shaped Dimers of a Plant Chloroplast FInternational journal of molecular sciences · 2023
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  4. Mirror proteorhodopsins.Communications chemistry · 2023
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  8. Review
  9. Structural insights into 3Fe-4S ferredoxins diversity inFrontiers in molecular biosciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Yury L Ryzhykau *Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0003-3719-1464
Philipp S Orekhov *Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0003-4078-4762
Maksim I Rulev *Structural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0002-7906-4634
Alexey V VlasovResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0001-9218-0464
Igor A MelnikovStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0003-2265-4534
Dmytro A VolkovInstitute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, 52425, Jülich, Germany.ORCID http://orcid.org/0000-0003-2451-0091
Mikhail Yu NikolaevResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0001-5955-900X
Dmitrii V ZabelskiiResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0001-6906-975X
Tatiana N MurugovaResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0001-9551-5450
Vladimir V ChupinResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0001-9253-1156
Andrey V RogachevResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0003-2872-7976
Andrey Yu GruzinovEuropean Molecular Biology Laboratory, Hamburg Outstation, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0001-8598-5491
Dmitri I SvergunEuropean Molecular Biology Laboratory, Hamburg Outstation, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-0830-5696
Martha E BrennichSynchrotron Crystallography Team, EMBL Grenoble Outstation, 71 Avenue des Martyrs, 38042, Grenoble, France.ORCID http://orcid.org/0000-0003-0415-8334
Ivan Yu GushchinResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0002-5348-6070
Montserrat Soler-LopezStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0002-5924-4734
Arne BotheDepartment Structural Biochemistry, Max Planck Institute of Molecular Physiology, 44227, Dortmund, Germany.
Georg BüldtResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.ORCID http://orcid.org/0000-0002-4488-5125
Gordon LeonardStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000, Grenoble, France.ORCID http://orcid.org/0000-0001-5030-0122
Martin EngelhardDepartment Structural Biochemistry, Max Planck Institute of Molecular Physiology, 44227, Dortmund, Germany.ORCID http://orcid.org/0000-0003-1921-9830
Alexander I KuklinResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia. kuklin@nf.jinr.ru.ORCID http://orcid.org/0000-0002-4530-2980
Valentin I GordeliyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia. g.valentin@fz-juelich.de.ORCID http://orcid.org/0000-0001-5782-5896
Moscow Institute of Physics and Technology · RUEuropean Synchrotron Radiation Facility · FREuropean Molecular Biology Laboratory · DEForschungszentrum Jülich · DEMax Planck Institute of Molecular Physiology · DECentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two-component systems (TCS) are widespread signaling systems present in all domains of life. TCS typically consist of a signal receptor/transducer and a response regulator. The receptors (histidine kinases, chemoreceptors and photoreceptors) are often embedded in the membrane and have a similar modular structure. Chemoreceptors were shown to function in highly ordered arrays, with trimers of dimers being the smallest functional unit. However, much less is known about photoreceptors. Here, we use small-angle scattering (SAS) to show that detergent-solubilized sensory rhodopsin II in complex with its cognate transducer forms dimers at low salt concentration, which associate into trimers of dimers at higher buffer molarities. We then fit an atomistic model of the whole complex into the SAS data. The obtained results suggest that the trimer of dimers is "tripod"-shaped and that the contacts between the dimers occur only through their cytoplasmic regions, whereas the transmembrane regions remain unconnected.

Identifiers

PMID34031444
PMCPMC8144572
OpenAlexW3164791910

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.