Evidence map›Paper›PMID 34031427›Full record

ArticleNature communications2021

Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding.

Klaas Yperman, Anna C Papageorgiou, Romain Merceron, Steven De Munck, Yehudi Bloch, Dominique Eeckhout, Qihang Jiang, Pieter Tack, Rosa Grigoryan, Thomas Evangelidis and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  7. Structural Insights and Calcium-Switching Mechanism ofInternational journal of molecular sciences · 2025
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  11. Exploring the potential role of fourFrontiers in plant science · 2024
    Article
  12. Article
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  14. TheeLife · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Klaas YpermanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0002-7542-1155
Anna C Papageorgiou *CEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Romain Merceron *Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Steven De MunckDepartment of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Yehudi BlochDepartment of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.ORCID 0000-0001-7924-3539
Dominique EeckhoutDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0001-5770-7670
Qihang JiangDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Pieter TackDepartment of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium.ORCID 0000-0001-8437-6678
Rosa GrigoryanDepartment of Chemistry, Atomic & Mass Spectrometry - A&MS Research Unit, Ghent University, Ghent, Belgium.ORCID 0000-0002-0909-9217
Thomas EvangelidisCEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Jelle Van LeeneDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0002-4932-8192
Laszlo VinczeDepartment of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium.
Peter VandenabeeleDepartment of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium.
Frank VanhaeckeDepartment of Chemistry, Atomic & Mass Spectrometry - A&MS Research Unit, Ghent University, Ghent, Belgium.ORCID 0000-0002-1884-3853
Martin PotockýInstitute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague 6, Czech Republic.ORCID 0000-0002-3699-7549
Geert De JaegerDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID 0000-0001-6558-5669
Savvas N SavvidesDepartment of Biochemistry and Microbiology, Ghent University, Ghent, Belgium. savvas.savvides@irc.vib-ugent.be.ORCID 0000-0003-3420-5947
Konstantinos TripsianesCEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic. kostas.tripsianes@ceitec.muni.cz.ORCID 0000-0003-0948-813X
Roman PleskotDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. pleskot@ueb.cas.cz.ORCID 0000-0003-0436-9748
Daniel Van DammeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. daniel.vandamme@psb.vib-ugent.be.ORCID 0000-0002-9385-4851
Ghent University · BECentral European Institute of Technology · CZCzech Academy of Sciences, Institute of Experimental Botany · CZVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clathrin-mediated endocytosis (CME) is the gatekeeper of the plasma membrane. In contrast to animals and yeasts, CME in plants depends on the TPLATE complex (TPC), an evolutionary ancient adaptor complex. However, the mechanistic contribution of the individual TPC subunits to plant CME remains elusive. In this study, we used a multidisciplinary approach to elucidate the structural and functional roles of the evolutionary conserved N-terminal Eps15 homology (EH) domains of the TPC subunit AtEH1/Pan1. By integrating high-resolution structural information obtained by X-ray crystallography and NMR spectroscopy with all-atom molecular dynamics simulations, we provide structural insight into the function of both EH domains. Both domains bind phosphatidic acid with a different strength, and only the second domain binds phosphatidylinositol 4,5-bisphosphate. Unbiased peptidome profiling by mass-spectrometry revealed that the first EH domain preferentially interacts with the double N-terminal NPF motif of a previously unidentified TPC interactor, the integral membrane protein Secretory Carrier Membrane Protein 5 (SCAMP5). Furthermore, we show that AtEH/Pan1 proteins control the internalization of SCAMP5 via this double NPF peptide interaction motif. Collectively, our structural and functional studies reveal distinct but complementary roles of the EH domains of AtEH/Pan1 in plant CME and connect the internalization of SCAMP5 to the TPLATE complex.

Indexed as

EndocytosisProtein BindingAdaptor Proteins, Signal TransducingArabidopsis ProteinsCalcium-Binding ProteinsCell MembraneCrystallography, X-RayMembrane ProteinsMolecular Dynamics SimulationNicotianaPlant ProteinsPlants, Genetically ModifiedProtein DomainsProtein TransportSequence AlignmentAdaptor Proteins, Signal TransducingArabidopsis ProteinsCalcium-Binding ProteinsMembrane ProteinsPlant ProteinsTPLATE protein, Arabidopsis

Identifiers

PMID34031427
PMCPMC8144573
OpenAlexW3165661157

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.