Evidence map›Paper›PMID 34031375›Full record

ArticleTranslational psychiatry2021

Mapping the transcriptomics landscape of post-traumatic stress disorder symptom dimensions in World Trade Center responders.

Pei-Fen Kuan, Xiaohua Yang, Xu Ren, Chang Che, Monika Waszczuk, Roman Kotov, Sean Clouston, Prashant K Singh, Sean T Glenn, Eduardo Cortes Gomez and 3 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Pei-Fen KuanDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, USA. peifen.kuan@stonybrook.edu.
Xiaohua YangDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA.
Xu RenDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, USA.
Chang CheDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, USA.
Monika WaszczukDepartment of Psychology, Rosalind Franklin University of Medicine and Science, North Chicago, IL, USA.
Roman KotovDepartment of Psychiatry, Stony Book University, Stony Brook, NY, USA.
Sean CloustonDepartment of Family and Preventive Medicine, Stony Book University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0002-6124-0329
Prashant K SinghDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, NY, USA.
Sean T GlennDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, NY, USA.
Eduardo Cortes GomezDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-0966-6488
Jianmin WangDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA.
Evelyn BrometDepartment of Psychiatry, Stony Book University, Stony Brook, NY, USA.
Benjamin J LuftDepartment of Medicine, Stony Brook University, Stony Brook, NY, USA. Benjamin.luft@stonybrookmedicine.edu.ORCID http://orcid.org/0000-0001-9008-7004
Stony Brook University · USRoswell Park Comprehensive Cancer Center · USRosalind Franklin University of Medicine and Science · USStony Brook Medicine · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Longitudinal genome-wide transcriptome study of PTSD symptom change in WTC respondersU01OH011478 · OH · STATE UNIVERSITY NEW YORK STONY BROOK · PI KUAN, PEI-FEN · 2017 to 2019
$1.5M
NCI NIH HHS P30 CA016056NIOSH CDC HHS U01 OH011478U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA016056
6 · The paper itself

Abstract

Gene expression has provided promising insights into the pathophysiology of post-traumatic stress disorder (PTSD); however, specific regulatory transcriptomic mechanisms remain unknown. The present study addressed this limitation by performing transcriptome-wide RNA-Seq of whole-blood samples from 226 World Trade Center responders. The investigation focused on differential expression (DE) at the gene, isoform, and for the first time, alternative splicing (AS) levels associated with the symptoms of PTSD: total burden, re-experiencing, avoidance, numbing, and hyperarousal subdimensions. These symptoms were associated with 76, 1, 48, 15, and 49 DE genes, respectively (FDR < 0.05). Moreover, they were associated with 103, 11, 0, 43, and 32 AS events. Avoidance differed the most from other dimensions with respect to DE genes and AS events. Gene set enrichment analysis (GSEA) identified pathways involved in inflammatory and metabolic processes, which may have implications in the treatment of PTSD. Overall, the findings shed a novel light on the wide range of transcriptomic alterations associated with PTSD at the gene and AS levels. The results of DE analysis associated with PTSD subdimensions highlights the importance of studying PTSD symptom heterogeneity.

Indexed as

Emergency RespondersSeptember 11 Terrorist AttacksStress Disorders, Post-TraumaticHumansTranscriptome

Identifiers

PMID34031375
PMCPMC8144574
OpenAlexW3164344923

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.