Evidence map›Paper›PMID 34030655›Full record

ArticleBMC microbiology2021

The metabolic profile of Bifidobacterium dentium reflects its status as a human gut commensal.

Melinda A Engevik, Heather A Danhof, Anne Hall, Kristen A Engevik, Thomas D Horvath, Sigmund J Haidacher, Kathleen M Hoch, Bradley T Endres, Meghna Bajaj, Kevin W Garey and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  13. Microbiome research reports · 2023
    Review
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  19. Article
  20. The role ofGut microbes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Melinda A EngevikDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA. engevik@musc.edu.
Heather A DanhofDepartment of Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA.
Anne HallDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Kristen A EngevikDepartment of Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA.
Thomas D HorvathDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Sigmund J HaidacherDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Kathleen M HochDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Bradley T EndresDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, TX, USA.
Meghna BajajDepartment of Chemistry and Physics, and Department of Biotechnology, Alcorn State University, Lorman, MS, 39096, USA.
Kevin W GareyDepartment of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, TX, USA.
Robert A BrittonDepartment of Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA.
Jennifer K SpinlerDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Anthony M HaagDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
James VersalovicDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Baylor College of Medicine · USTexas Children's Hospital · USUniversity of Houston · USAlcorn State University · US

Funding

The role of SMAD1 and SATB2 in colon patterningP20GM130457 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI STEPHEN A DUNCAN · 2020 to 2026
$18.7M
Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DON C. ROCKEY · 2020 to 2026
$8.8M
Decoding Antibiotic-induced Susceptibility to Clostridium difficile InfectionU01AI124290 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BRITTON, ROBERT A, GAREY, KEVIN W · 2016 to 2020
$7.9M
Diet driven evolution of epidemic ribotypes of Clostridium difficileR01AI123278 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BRITTON, ROBERT A · 2018 to 2022
$2.0M
Identifying the role of serotonin receptor 4 and trefoil factor 3 in intestinal wound repairK01DK123195 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ENGEVIK, MELINDA ANNE · 2020 to 2024
$612k
Metabolic adaptation drives pathogenicity of C. difficile epidemic strain RT078F32AI136404 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI DANHOF, HEATHER A. · 2019 to 2021
$191k
NIAID NIH HHS F32 AI136404NIAID NIH HHS R01 AI123278NIAID NIH HHS U01 AI124290NIDDK NIH HHS K01 DK123195NIDDK NIH HHS P30 DK123704NIGMS NIH HHS P20 GM130457
6 · The paper itself

Abstract

backgroundBifidobacteria are commensal microbes of the mammalian gastrointestinal tract. In this study, we aimed to identify the intestinal colonization mechanisms and key metabolic pathways implemented by Bifidobacterium dentium.

resultsB. dentium displayed acid resistance, with high viability over a pH range from 4 to 7; findings that correlated to the expression of Na+/H+ antiporters within the B. dentium genome. B. dentium was found to adhere to human MUC2+ mucus and harbor mucin-binding proteins. Using microbial phenotyping microarrays and fully-defined media, we demonstrated that in the absence of glucose, B. dentium could metabolize a variety of nutrient sources. Many of these nutrient sources were plant-based, suggesting that B. dentium can consume dietary substances. In contrast to other bifidobacteria, B. dentium was largely unable to grow on compounds found in human mucus; a finding that was supported by its glycosyl hydrolase (GH) profile. Of the proteins identified in B. dentium by proteomic analysis, a large cohort of proteins were associated with diverse metabolic pathways, indicating metabolic plasticity which supports colonization of the dynamic gastrointestinal environment.

conclusionsTaken together, we conclude that B. dentium is well adapted for commensalism in the gastrointestinal tract.

Indexed as

Gastrointestinal MicrobiomeAcidsBacterial ProteinsBifidobacteriumGastrointestinal TractGenome, BacterialGlucoseHumansSymbiosisAcidsBacterial ProteinsGlucoseAcid stressBifidobacteriaCarbohydratesCommensalGlycansIntestineMetabolism

Identifiers

PMID34030655
PMCPMC8145834
OpenAlexW3164318701

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.