Evidence map›Paper›PMID 34030093›Full record

ArticleBiosensors & bioelectronics2021

Human sensor-inspired supervised machine learning of smartphone-based paper microfluidic analysis for bacterial species classification.

Sangsik Kim, Min Hee Lee, Theanchai Wiwasuku, Alexander S Day, Sujittra Youngme, Dong Soo Hwang, Jeong-Yeol Yoon

Open access · greenAbstract read
In one paragraph

Article in Biosensors & bioelectronics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  15. Paper-based sensors for bacteria detection.Nature reviews bioengineering · 2023
    Review
  16. Article
  17. Article
  18. Overview of Rapid Detection Methods forFoods (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Sangsik KimDepartment of Biosystems Engineering, The University of Arizona, Tucson, AZ, 85721, United States.
Min Hee LeeDivision of Environmental Science and Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongsangbuk-do, 37673, Republic of Korea.
Theanchai WiwasukuMaterials Chemistry Research Centre, Department of Chemistry and Centre of Excellence for Innovation in Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen, 40002, Thailand.
Alexander S DayDepartment of Biomedical Engineering, The University of Arizona, Tucson, AZ, 85721, United States.
Sujittra YoungmeMaterials Chemistry Research Centre, Department of Chemistry and Centre of Excellence for Innovation in Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen, 40002, Thailand.
Dong Soo HwangDivision of Environmental Science and Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongsangbuk-do, 37673, Republic of Korea. Electronic address: dshwang@postech.ac.kr.
Jeong-Yeol YoonDepartment of Biosystems Engineering, The University of Arizona, Tucson, AZ, 85721, United States; Department of Biomedical Engineering, The University of Arizona, Tucson, AZ, 85721, United States. Electronic address: jyyoon@arizona.edu.
University of Arizona · USKhon Kaen University · THPohang University of Science and Technology · KR

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Cardiovascular Biomedical Engineering Training GrantT32HL007955 · NHLBI · UNIVERSITY OF ARIZONA · PI BARTON, JENNIFER KEHLET · 2001 to 2020
$5.1M
NHLBI NIH HHS T32 HL007955NIEHS NIH HHS P30 ES006694
6 · The paper itself

Abstract

Bacteria identification has predominantly been conducted using specific bioreceptors such as antibodies or nucleic acid sequences. This approach may be inappropriate for environmental monitoring when the user does not know the target bacterial species and for screening complex water samples with many unknown bacterial species. In this work, we investigate the supervised machine learning of the bacteria-particle aggregation pattern induced by the peptide sets identified from the biofilm-bacteria interface. Each peptide is covalently conjugated to polystyrene particles and loaded together with bacterial suspensions onto paper microfluidic chips. Each peptide interacts with bacterial species to a different extent, leading to varying sizes of particle aggregation. This aggregation changes the surface tension and viscosity of the liquid flowing through the paper pores, altering the flow velocity at different extents. A smartphone camera captures this flow velocity without being affected by ambient and environmental conditions, towards a low-cost, rapid, and field-ready assay. A collection of such flow velocity data generates a unique fingerprinting profile for each bacterial species. Support vector machine is utilized to classify the species. At optimized conditions, the training model can predict the species at 93.3% accuracy out of five bacteria: Escherichia coli, Staphylococcus aureus, Salmonella Typhimurium, Enterococcus faecium, and Pseudomonas aeruginosa. Flow rates are monitored for less than 6 s and the sample-to-answer assay time is less than 10 min. The demonstrated method can open a new way of analyzing complex biological and environmental samples in a biomimetic manner with machine learning classification.

Indexed as

Biosensing TechniquesMicrofluidic Analytical TechniquesHumansMicrofluidicsSmartphoneSupervised Machine LearningBacteria identificationBiofilmBiointerfacePaper microfluidic chipPathogenSupport vector machine (SVM)

Identifiers

PMID34030093
PMCPMC8192483
OpenAlexW3163191468

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.