Evidence map›Paper›PMID 34027897›Full record

ArticleJCI insight2021

The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age.

Paula P Freire, Alexandre Hc Marques, Gabriela C Baiocchi, Lena F Schimke, Dennyson Lm Fonseca, Ranieri C Salgado, Igor S Filgueiras, Sarah Ms Napoleao, Desirée R Plaça, Karen T Akashi and 13 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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  16. Cytokine Profiles Associated With Acute COVID-19 and Long COVID-19 Syndrome.Frontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 7 countries.

Paula P FreireDepartment of Immunology, Institute of Biomedical Sciences, and.
Alexandre Hc MarquesDepartment of Immunology, Institute of Biomedical Sciences, and.
Gabriela C BaiocchiDepartment of Immunology, Institute of Biomedical Sciences, and.
Lena F SchimkeDepartment of Immunology, Institute of Biomedical Sciences, and.
Dennyson Lm FonsecaDepartment of Immunology, Institute of Biomedical Sciences, and.
Ranieri C SalgadoDepartment of Immunology, Institute of Biomedical Sciences, and.
Igor S FilgueirasDepartment of Immunology, Institute of Biomedical Sciences, and.
Sarah Ms NapoleaoDepartment of Immunology, Institute of Biomedical Sciences, and.
Desirée R PlaçaDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Karen T AkashiDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Thiago Dominguez Crespo HirataDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Nadia El KhawankyDepartment of Hematology and Oncology, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Lasse M GiilDepartment of Internal Medicine, Haraldsplass Deaconess Hospital, Bergen, Norway.
Gustavo Cabral-MirandaDepartment of Immunology, Institute of Biomedical Sciences, and.
Robson F CarvalhoDepartment of Structural and Functional Biology, Institute of Biosciences, São Paulo State University, Botucatu, São Paulo.
Luis Carlos S FerreiraVaccine Development Laboratory, Institute of Biomedical Sciences, Department of Microbiology, University of São Paulo, São Paulo, Brazil.
Antonio Condino-NetoDepartment of Immunology, Institute of Biomedical Sciences, and.
Helder I NakayaDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Igor JurisicaKrembil Research Institute, University Health Network, and Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, Canada.
Hans D OchsDepartment of Pediatrics, University of Washington School of Medicine, and Seattle Children's Research Institute, Seattle, Washington.
Niels Olsen Saraiva CamaraDepartment of Immunology, Institute of Biomedical Sciences, and.
Vera Lúcia G CalichDepartment of Immunology, Institute of Biomedical Sciences, and.
Otavio Cabral-MarquesDepartment of Immunology, Institute of Biomedical Sciences, and.
Institute of Biomedical Science · GBUniversidade de São Paulo · BRHaraldsplass Diakonale Sykehus · NOSeattle Children's Hospital · USUniversidade Estadual Paulista (Unesp) · BRUniversity Health Network · CAUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1β, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures.

Indexed as

Gene Regulatory NetworksAdultAgedAge FactorsCOVID-19CytokinesFemaleHumansMaleMiddle AgedNeutrophilsSARS-CoV-2Sex FactorsTranscriptomeCytokinesCOVID-19CytokinesInflammationMolecular geneticsNeutrophils

Identifiers

PMID34027897
PMCPMC8262322
OpenAlexW3165190268

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.