Evidence map›Paper›PMID 34025350›Full record

ArticleFrontiers in molecular neuroscience2021

Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition.

Sergio Espeso-Gil, Aliaksei Z Holik, Sarah Bonnin, Shalu Jhanwar, Sandhya Chandrasekaran, Roger Pique-Regi, Júlia Albaigès-Ràfols, Michael Maher, Jon Permanyer, Manuel Irimia and 7 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Sergio Espeso-GilCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Aliaksei Z HolikCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Sarah BonninCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Shalu JhanwarCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Sandhya ChandrasekaranMD/PhD Program in the Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Roger Pique-RegiCenter for Molecular Medicine and Genetics, Wayne State University, Detroit, MI, United States.
Júlia Albaigès-RàfolsCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Michael MaherCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Jon PermanyerCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Manuel IrimiaCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Marc R FriedländerScience for Life Laboratory, Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.
Meritxell Pons-EspinalCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Schahram AkbarianDepartment of Psychiatry and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Mara DierssenCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Philipp G MaassGenetics and Genome Biology Program, SickKids Research Institute, Toronto, ON, Canada.
Charlotte N HorCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Stephan OssowskiCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Centre for Genomic Regulation · ESPompeu Fabra University · ESAllen Institute for Brain Science · USSickKids Foundation · CAStockholm University · SEWayne State University · US

Funding

Functional Characterization of the Genetic and Environmental Determinants of Complex TraitsR01GM109215 · NIGMS · WAYNE STATE UNIVERSITY · PI Francesca Luca, Roger Pique-Regi · 2014 to 2026
$3.2M
Research Training in the Neuroscience of AgingT32AG049688 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Joseph Michael Castellano, PATRICK R HOF · 2015 to 2026
$3.0M
Neurodevelopmental Phenotypes in MLL mutant miceR01MH104341 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM · 2015 to 2019
$2.1M
Epigenomic Regulation of a Large, Neuron-specific Chromatin DomainR01MH117790 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM · 2018 to 2022
$2.1M
New methods and theories to interrogate organizational principles from single cell to neuronal networksR01EB028159 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIERSSEN, MARA, YE, BING · 2019 to 2019
$951k
NIA NIH HHS T32 AG049688NIBIB NIH HHS R01 EB028159NIGMS NIH HHS R01 GM109215NIMH NIH HHS R01 MH104341NIMH NIH HHS R01 MH117790
6 · The paper itself

Abstract

In early development, the environment triggers mnemonic epigenomic programs resulting in memory and learning experiences to confer cognitive phenotypes into adulthood. To uncover how environmental stimulation impacts the epigenome and genome organization, we used the paradigm of environmental enrichment (EE) in young mice constantly receiving novel stimulation. We profiled epigenome and chromatin architecture in whole cortex and sorted neurons by deep-sequencing techniques. Specifically, we studied chromatin accessibility, gene and protein regulation, and 3D genome conformation, combined with predicted enhancer and chromatin interactions. We identified increased chromatin accessibility, transcription factor binding including CTCF-mediated insulation, differential occupancy of H3K36me3 and H3K79me2, and changes in transcriptional programs required for neuronal development. EE stimuli led to local genome re-organization by inducing increased contacts between chromosomes 7 and 17 (

Indexed as

3D genome organizationchromatin accessibilityenvironmental enrichmentepigeneticsHi-Cinter-chromosomal contactslearningpostnatal development

Identifiers

PMID34025350
PMCPMC8131874
OpenAlexW3157674268

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.