Evidence map›Paper›PMID 34022525›Full record

ArticleComparative biochemistry and physiology. Part D, Genomics & proteomics2021

RNA-Seq analysis of the blue light-emitting Orfelia fultoni (Diptera: Keroplatidae) suggest photoecological adaptations at the molecular level.

Danilo T Amaral, Carl H Johnson, Vadim R Viviani

Open access · greenAbstract read
In one paragraph

Article in Comparative biochemistry and physiology. Part D, Genomics & proteomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Danilo T AmaralGraduate School of Biotechnology and Environmental Monitoring (UFSCar), Sorocaba, SP, Brazil.
Carl H JohnsonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Vadim R VivianiGraduate School of Biotechnology and Environmental Monitoring (UFSCar), Sorocaba, SP, Brazil; Graduate School of Evolutive Genetics and Molecular Biology, Federal Univ. São Carlos (UFSCar), São Carlos, SP, Brazil. Electronic address: viviani@ufscar.br.
Universidade de Sorocaba · BRUniversidade Federal de São Carlos · BRVanderbilt University · US

Funding

Coupling Optogenetics with Novel Luminescence Reporters of Neural ActivityR21MH116150 · NIMH · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2018 to 2019
$432k
NIMH NIH HHS R21 MH116150
6 · The paper itself

Abstract

Bioluminescence in Diptera is found in the Keroplatidae family, within Arachnocampininae and Keroplatinae subfamilies, with reported occurrences in Oceania, Eurasia, and Americas. Larvae of Orfelia fultoni, which inhabit stream banks in the Appalachian Mountains, emit the bluest bioluminescence among insects, using it for prey attraction, similarly to Arachnocampa spp. Although bioluminescence has a similar prey attraction function, the systems of Arachonocampininae and Keroplatinae subfamilies are morphologically/biochemically distinct, indicating different evolutionary origins. To identify the possible coding genes associated with physiological control, ecological adaptations, and origin/evolution of bioluminescence in the Keroplatinae subfamily, we performed the RNA-Seq analysis of O. fultoni larvae during day and night and compared it with the transcriptomes of Arachnocampa luminosa, and reanalyzed the previously published proteomic data of O. fultoni against the RNA-Seq dataset. The abundance of chaperones/heat-shock and hexamerin gene products at night and in luciferase enriched fractions supports their possible association and participation in bioluminescence. The low diversity of copies/families of opsins indicate a simpler visual system in O. fultoni. Noteworthy, gene products associated with silk protein biosynthesis in Orfelia were more similar to Lepidoptera than to the Arachnocampa, indicating that, similarly to the bioluminescent systems, at some point, the biochemical apparatus for web construction may have evolved independently in Orfelia and Arachnocampa.

Indexed as

Adaptation, PhysiologicalLuminescenceAnimalsDipteraEcosystemInsect ProteinsLightLuminescent ProteinsProteomeRNA-SeqTranscriptomeInsect ProteinsLuminescent ProteinsProteomeArachnocampaBioluminescenceChaperonesDipteraOrfeliaRNA-Seq

Identifiers

PMID34022525
PMCPMC8495875
OpenAlexW3161779067

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.