Evidence map›Paper›PMID 34022127›Full record

ArticleImmunity2021

Profiling B cell immunodominance after SARS-CoV-2 infection reveals antibody evolution to non-neutralizing viral targets.

Haley L Dugan, Christopher T Stamper, Lei Li, Siriruk Changrob, Nicholas W Asby, Peter J Halfmann, Nai-Ying Zheng, Min Huang, Dustin G Shaw, Mari S Cobb and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 143 citations in OpenAlex.

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  18. Pan-Variant SARS-CoV-2 Vaccines Induce Protective Immunity by Targeting Conserved Epitopes.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 5 institutions in 1 country.

Haley L DuganCommittee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Christopher T StamperCommittee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Lei LiUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Siriruk ChangrobUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Nicholas W AsbyPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.
Peter J HalfmannInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53711.
Nai-Ying ZhengUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Min HuangUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Dustin G ShawCommittee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Mari S CobbSection of Genetic Medicine, University of Chicago, Chicago, IL 60637, USA.
Steven A EricksonUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Jenna J GuthmillerUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Olivia StovicekUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Jiaolong WangUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Emma S WinklerDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA; Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63130, USA.
Maria Lucia MadariagaDepartment of Surgery, University of Chicago, Chicago, IL 60637, USA.
Kumaran ShanmugarajahDepartment of Surgery, University of Chicago, Chicago, IL 60637, USA.
Maud O JansenDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA.
Fatima AmanatDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Isabelle StewartUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Henry A UtsetUniversity of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA.
Jun HuangCommittee on Immunology, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.
Christopher A NelsonDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA.
Ya-Nan DaiDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA.
Paige D HallDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA.
Robert P JedrzejczakCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA; Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Andrzej JoachimiakCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA; Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA.
Florian KrammerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Michael S DiamondDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA; Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63130, USA; Department of Molecular Immunology, Washington University School of Medicine, St Louis, MO 63130, USA.
Daved H FremontDepartment of Medicine, Washington University School of Medicine, St Louis, MO 63130, USA.
Yoshihiro KawaokaInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53711; Division of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of Tokyo, 108-8639 Tokyo, Japan.
Patrick C WilsonCommittee on Immunology, University of Chicago, Chicago, IL 60637, USA; University of Chicago Department of Medicine, Section of Rheumatology, Chicago, IL 60637, USA. Electronic address: wilsonp@uchicago.edu.
University of Chicago · USWashington University in St. Louis · USArgonne National Laboratory · USIcahn School of Medicine at Mount Sinai · USUniversity of Wisconsin–Madison · US

Funding

COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
VACCINE INDUCED IMMUNITY IN THE YOUNG AND AGEDU19AI057266 · NIAID · EMORY UNIVERSITY · PI Rafi Ahmed · 2003 to 2026
$81.7M
COVID Supplement B Cell Epitope Discovery and Mechanisms of Antibody Protection.75N93019C00062 · NIAID · WASHINGTON UNIVERSITY · PI FREMONT, DAVED · 2019 to 2023
$11.7M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007090 · NIAID · UNIVERSITY OF CHICAGO · PI Peter Aidan Savage · 1985 to 2026
$11.7M
Multi-Disciplinary Training Grant in Cancer ResearchT32CA009594 · NCI · UNIVERSITY OF CHICAGO · PI KAY F MACLEOD, Scott A. Oakes · 1989 to 2026
$11.5M
Understanding Human B Cell Responses to Influenza to Improve the Influenza U19AI109946 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI RAVETCH, JEFFREY VICTOR · 2014 to 2018
$9.6M
University of Chicago Autoimmunity Center of ExcellenceU19AI082724 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2009 to 2023
$7.2M
Human antibody-based countermeasures against the Wuhan Coronavirus SARS-CoV-2R01AI157155 · NIAID · WASHINGTON UNIVERSITY · PI BARIC, RALPH S, CROWE, JAMES E · 2020 to 2024
$6.0M
Regulation of Antiviral Responses in Plasmacytoid Dendritic Cells to Chikungunya Virus by the Gut MicrobiotaF30AI152327 · NIAID · WASHINGTON UNIVERSITY · PI WINKLER, EMMA SUENING · 2021 to 2022
$84k
NCI NIH HHS T32 CA009594NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93019C00062NIAID NIH HHS F30 AI152327NIAID NIH HHS HHSN272201400005CNIAID NIH HHS HHSN272201400008CNIAID NIH HHS HHSN272201700060CNIAID NIH HHS R01 AI157155NIAID NIH HHS T32 AI007090NIAID NIH HHS U19 AI057266NIAID NIH HHS U19 AI082724NIAID NIH HHS U19 AI109946
6 · The paper itself

Abstract

Dissecting the evolution of memory B cells (MBCs) against SARS-CoV-2 is critical for understanding antibody recall upon secondary exposure. Here, we used single-cell sequencing to profile SARS-CoV-2-reactive B cells in 38 COVID-19 patients. Using oligo-tagged antigen baits, we isolated B cells specific to the SARS-CoV-2 spike, nucleoprotein (NP), open reading frame 8 (ORF8), and endemic human coronavirus (HCoV) spike proteins. SARS-CoV-2 spike-specific cells were enriched in the memory compartment of acutely infected and convalescent patients several months post symptom onset. With severe acute infection, substantial populations of endemic HCoV-reactive antibody-secreting cells were identified and possessed highly mutated variable genes, signifying preexisting immunity. Finally, MBCs exhibited pronounced maturation to NP and ORF8 over time, especially in older patients. Monoclonal antibodies against these targets were non-neutralizing and non-protective in vivo. These findings reveal antibody adaptation to non-neutralizing intracellular antigens during infection, emphasizing the importance of vaccination for inducing neutralizing spike-specific MBCs.

Indexed as

Antibodies, NeutralizingAntibodies, ViralAntibody FormationB-LymphocytesComputational BiologyCOVID-19Cross ReactionsEpitope MappingFemaleGene Expression ProfilingHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsHumansImmunodominant EpitopesImmunologic MemoryMaleAntibodies, NeutralizingAntibodies, ViralImmunodominant EpitopesSpike Glycoprotein, CoronavirusantibodyCOVID-19immunodominancememory B cellnucleoproteinORF8preexisting immunityRNA sequencingSARS-CoV-2spike

Identifiers

PMID34022127
PMCPMC8101792
OpenAlexW3157116442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.