ArticleMolecular biology reports2021
16S rRNA gene profiling of rhizospheric microbial community of Eichhornia crassipes.
Article in Molecular biology reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 27 citations in OpenAlex.
- From gut to joint: the protective impact ofFrontiers in immunology · 2025Article
- Integrated Analysis of Metatranscriptome and Amplicon Sequencing to Reveal Distinctive Rhizospheric Microorganisms of Salt-Tolerant Rice.Plants (Basel, Switzerland) · 2024Article
- Understanding the bacterial community structure associated with the Eichhornia crassipes rootzone.Molecular biology reports · 2023Article
- Molecular Detection and Identification of Plant-AssociatedInternational journal of molecular sciences · 2023Review
- Characterization of endophytic bacteriome diversity and associated beneficial bacteria inhabiting a macrophyteFrontiers in plant science · 2023Article
- Analysis and Interpretation of metagenomics data: an approach.Biological procedures online · 2022Review
- Establishment and Validation of a New Analysis Strategy for the Study of Plant Endophytic Microorganisms.International journal of molecular sciences · 2022Article
- History of the Study of the GenusInternational journal of molecular sciences · 2022Review
- Characterization of Vaginal Microbiota in Third Trimester Premature Rupture of Membranes Patients through 16S rDNA Sequencing.Pathogens (Basel, Switzerland) · 2022Article
- Two New Species of Filamentous Sulfur Bacteria of the GenusMicroorganisms · 2022Article
- Effect of piperine on the mitigation of obesity associated with gut microbiota alteration.Current research in food science · 2022Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rhizosphere of a plant is an important interface for the plant-microbe interaction that plays a significant role in the uptake and removal of heavy metal from contaminated sites. Eichhornia crassipes is a free-floating macrophyte and a well-known metal hyperaccumulator. It is a promising plant, which harbors a diverse microbial community in its rhizosphere. Therefore it is hypothesized that it can be a good habitat for microorganisms that supports plant growth and increases its phytoremediation potential. The rhizospheric DNA was extracted from the procured plant samples. The library was prepared and sequenced using the Illumina platform. 16S rRNA data from the Next Generation Sequencing (NGS) platform was analyzed using the QIIME software package. Alpha diversity was estimated from statistical indices i.e. Shannon index, Chao1 index, and observed species. The rarefaction plots, rank abundance curve, krona graph, and heat map were generated to study the rhizospheric community in detail. Metagenome consisted of 225,408 flash reads, 185,008 non-chimeric sequences with 17,578 Operational Taxonomic Units (OTU's), and 4622 OTU's without singletons. The data of present study are available at NCBI Bioproject (PRJNA631882). The taxonomic analysis of OTU's showed that the sequences belonged to major Phyla revealing the dominance of Proteobacteria, Bacteroidetes, Cyanobacteria, and Verrucomicrobia. The most abundant Genera in the sampled rhizosphere recorded were Thiothrix and Flavobacterium.
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