ArticleNature methods2021
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
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Article in Nature methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.
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68citing papers in PubMed
–field-weighted citation impact
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
68 citing papers in PubMed.
- Towards the digital analytical sciences in chemistry and biochemistry: from FAIR data ecosystems to artificial intelligence.Analytical and bioanalytical chemistry · 2026Review
- Data Management Workflow for FAIR Sharing of Bioimaging Datasets in Plasma Medicine.Scientific data · 2026Article
- Towards a standardized file format and open-source analysis framework for Brillouin microscopy data.Nature methods · 2026Article
- IDR searcher: a search engine solution for public image resources.Bioinformatics (Oxford, England) · 2026Article
- A human induced pluripotent stem cell model for the holistic study of epithelial-to-mesenchymal transitions.Nature methods · 2026Article
- Quantifying the spatiotemporal mechanical dynamics of engineered cardiac microbundles.PLoS computational biology · 2026Article
- Bridging annotated microscopy imaging data and analysis method development for scientific discovery.Patterns (New York, N.Y.) · 2026Review
- 2D Multimodal Image Collection for Fluorescence Prediction from Transmitted Light Microscopy.Scientific data · 2026Article
- A scoping study of the whole-cell imaging literature as a foundation for the emerging field of cell anatomy.BMC biology · 2026Article
- A fluorescence lifetime separation approach for FLIM live-cell imaging.Journal of microscopy · 2026Article
- Embedding FAIR Data Practices in Shared Core Resource Facilities.Journal of biomolecular techniques : JBT · 2026Review
- From cells to pixels: A decision tree for designing bioimage analysis pipelines.Journal of microscopy · 2025Article
- MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis.Nature methods · 2025Review
- The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.Genome biology · 2025Article
- Article
- Colony context and size-dependent compensation mechanisms give rise to variations in nuclear growth trajectories.Cell systems · 2025Article
- Bridging imaging-based in vitro methods from biomedical research to regulatory toxicology.Archives of toxicology · 2025Review
- Practical considerations for data exploration in quantitative cell biology.Journal of cell science · 2025Article
- Enabling global image data sharing in the life sciences.Nature methods · 2025Review
- MetaMax: an objective-sized instrument for advanced light microscope characterization and performance metadata collection.Optics express · 2025Article
8 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
46 authors.
Ugis SarkansEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK. ugis@ebi.ac.uk.ORCID http://orcid.org/0000-0001-9227-8488
Wah ChiuDepartment of Bioengineering, Stanford University, Stanford and SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-8910-3078
Lucy CollinsonFrancis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-0260-613X
Michele C DarrowSPT Labtech Ltd, Melbourn, UK.ORCID http://orcid.org/0000-0001-6259-1684
Jan EllenbergCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5909-701X
David GrunwaldRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-9067-804X
Jean-Karim HérichéCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Andrii IudinEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-1118-2853
Gabriel G MartinsInstituto Gulbenkian de Ciencia Oeiras, Lisboa, Portugal.ORCID http://orcid.org/0000-0002-6506-9776
Terry MeehanEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Kedar NarayanCenter for Molecular Microscopy, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-7982-6494
Ardan PatwardhanEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-7663-9028
Matthew Robert Geoffrey RussellFrancis Crick Institute, London, UK.
Helen R SaibilInstitute of Structural and Molecular Biology, Birkbeck, University of London, London, UK.ORCID http://orcid.org/0000-0002-2266-8891
Caterina Strambio-De-CastilliaProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0002-1069-1816
Jason R SwedlowDivision of Computational Biology and Centre for Gene Regulation and Expression, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-2198-1958
Christian TischerCentre for Bioimage Analysis, European Molecular Biology Laboratory, Heidelberg, Germany.
Virginie UhlmannEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-2859-9241
Paul VerkadeSchool of Biochemistry, University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0002-2497-1026
Mary BarlowEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Omer BayraktarWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-6055-277X
Ewan BirneyEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-8314-8497
Cesare CatavitelloEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Christopher CawthorneNuclear Medicine and Molecular Imaging, Department of Imaging and Pathology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-5975-0354
Stephan Wagner-ConradCarl Zeiss Microscopy GmbH, Jena, Germany.
Elizabeth DukeDiamond Light Source, Harwell Science and Innovation Campus, Harwell, UK.ORCID http://orcid.org/0000-0003-2048-9598
Perrine Paul-GilloteauxUniversité de Nantes, CNRS, INSERM, l'institut du thorax, Nantes, France.
Emmanuel GustinJanssen Pharmaceutical Companies of Johnson & Johnson, Beerse, Belgium.ORCID http://orcid.org/0000-0002-7606-1075
Maria HarkiolakiDiamond Light Source, Harwell Science and Innovation Campus, Harwell, UK.ORCID http://orcid.org/0000-0001-8091-9057
Pasi KankaanpääTurku BioImaging, University of Turku and Åbo Akademi University, Turku, Finland.ORCID http://orcid.org/0000-0002-5890-0883
Thomas LembergerEMBO, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2499-4025
Jo McEntyreEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Josh MooreDivision of Computational Biology and Centre for Gene Regulation and Expression, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0003-4028-811X
Andrew W NichollsGlaxoSmithKline R&D, Stevenage, UK.
Shuichi OnamiRIKEN Center for Biosystems Dynamics Research, Kobe, Japan.ORCID http://orcid.org/0000-0002-8255-1724
Helen ParkinsonEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Maddy ParsonsRandall Centre for Cell and Molecular Biophysics, King's College London, London, UK.ORCID http://orcid.org/0000-0002-2021-8379
Marina RomanchikovaNational Physical Laboratory, Teddington, UK.
Nicholas SofroniewChan Zuckerberg Initiative, Redwood City, CA, USA.
Jim SwogerEuropean Molecular Biology Laboratory, Barcelona, Spain.
Nadine UtzGerman BioImaging e.V., University of Konstanz, Konstanz, Germany.
Lenard M VoortmanDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, the Netherlands.ORCID http://orcid.org/0000-0001-9794-067X
Frances WongDivision of Computational Biology and Centre for Gene Regulation and Expression, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0001-7397-8251
Peijun ZhangDiamond Light Source, Harwell Science and Innovation Campus, Harwell, UK.ORCID http://orcid.org/0000-0003-1803-691X
Gerard J KleywegtEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK. gerard@ebi.ac.uk.ORCID http://orcid.org/0000-0002-4670-0331
Alvis BrazmaEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK. brazma@ebi.ac.uk.ORCID http://orcid.org/0000-0001-5988-7409
Funding
4D Nucleome Network Data Coordination and Integration CenterU01CA200059 · NCI · HARVARD MEDICAL SCHOOL · PI PARK, PETER J · 2015 to 2024
$24.4MMouse Phenotyping Informatics Infrastructure - MP12UM1HG006370 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI Pilar Cacheiro Martinez, Helen Elizabeth Parkinson · 2016 to 2026
$20.4MUnified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6MVisualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imagingU01DA047733 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GRUNWALD, DAVID · 2018 to 2019
$1.0MVisualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imagingU01EB021238 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GRUNWALD, DAVID · 2015 to 2017
$990kBiotechnology and Biological Sciences Research Council BB/E001653/1Biotechnology and Biological Sciences Research Council BB/G000638/1Biotechnology and Biological Sciences Research Council BB/G022755/1Biotechnology and Biological Sciences Research Council BB/R015384/1Biotechnology and Biological Sciences Research Council BB/S003339/1Biotechnology and Biological Sciences Research Council BB/S018689/1Cancer Research UKCCR NIH HHS HHSN261200800001CMedical Research Council MR/L007835/1Medical Research Council MR/P019544/1NCI NIH HHS HHSN261200800001ENCI NIH HHS U01 CA200059NHGRI NIH HHS UM1 HG006370NIBIB NIH HHS U01 EB021238NIDA NIH HHS U01 DA047733NIGMS NIH HHS R01 GM079429Wellcome Trust 206422/Z/17/ZWellcome Trust 212962/Z/18/ZWellcome Trust 212980/Z/18/ZWellcome Trust FC001999
Abstract
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Indexed as
MetadataAlgorithmsAnimalsComputational BiologyCongresses as TopicCryoelectron MicroscopyDatabases, FactualData MiningDiagnostic ImagingHumansImage Processing, Computer-AssistedMicroscopySoftware
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