Evidence map›Paper›PMID 34020756›Full record

ArticleArtificial intelligence in medicine2021

Fenchel duality of Cox partial likelihood with an application in survival kernel learning.

Christopher M Wilson, Kaiqiao Li, Qiang Sun, Pei Fen Kuan, Xuefeng Wang

Abstract read
In one paragraph

Article in Artificial intelligence in medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Christopher M WilsonDepartment of Biostatistics and Bioinformatics, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL 33612, USA.
Kaiqiao LiDepartment of Applied Math & Statistics, Stony Brook University, Stony Brook, NY 11794, USA.
Qiang SunDepartment of Statistical Sciences, University of Toronto, Ontario M5S 3G3, Canada.
Pei Fen KuanDepartment of Applied Math & Statistics, Stony Brook University, Stony Brook, NY 11794, USA.
Xuefeng WangDepartment of Biostatistics and Bioinformatics, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL 33612, USA. Electronic address: xuefeng.wang@moffitt.org.

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5M
Investigating the prognostic role of intrinsic immune evasion mechanisms in HNSCCR01DE030493 · NIDCR · H. LEE MOFFITT CANCER CTR & RES INST · PI WANG, XUEFENG · 2021 to 2023
$1.2M
NCI NIH HHS P30 CA076292NIDCR NIH HHS R01 DE030493
6 · The paper itself

Abstract

The Cox proportional hazard model is one of the most widely used methods in modeling time-to-event data in the health sciences. Due to the simplicity of the Cox partial likelihood function, many machine learning algorithms use it for survival data. However, due to the nature of censored data, the optimization problem becomes intractable when more complicated regularization is employed, which is necessary when dealing with high dimensional omic data. In this paper, we show that a convex conjugate function of the Cox loss function based on Fenchel duality exists, and provide an alternative framework to optimization based on the primal form. Furthermore, the dual form suggests an efficient algorithm for solving the kernel learning problem with censored survival outcomes. We illustrate performance and properties of the derived duality form of Cox partial likelihood loss in multiple kernel learning problems with simulated and the Skin Cutaneous Melanoma TCGA datasets.

Indexed as

MelanomaSkin NeoplasmsAlgorithmsArtificial IntelligenceHumansProportional Hazards ModelsConvex conjugateConvex optimizationCox modelFenchel dualMultiple kernel learningSurvival data

Identifiers

PMID34020756
PMCPMC8159024

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.