Evidence map›Paper›PMID 34019384›Full record

ArticleBiochemistry2021

Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications.

Bert-Jan Baas, Brenda P Medellin, Jake A LeVieux, Kaci Erwin, Emily B Lancaster, William H Johnson, Tamer S Kaoud, R Yvette Moreno, Marieke de Ruijter, Patricia C Babbitt and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Bert-Jan Baas
Brenda P Medellin
Jake A LeVieux
Kaci Erwin
Emily B Lancaster
William H Johnson
Tamer S Kaoud
R Yvette Moreno
Marieke de Ruijter
Patricia C Babbitt
Christian P WhitmanORCID 0000-0002-8231-2483
The University of Texas at Austin · USUniversity of California, San Francisco · US

Funding

Laying the Foundation of Genomic EnzymologyR01GM060595 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BABBITT, PATRICIA CLEMENT · 2000 to 2018
$5.4M
Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
Structure-Function Relationships in the Tautomerase SuperfamilyR01GM129331 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI WHITMAN, CHRISTIAN P. · 2018 to 2021
$1.3M
Bruker AVANCE III HD 500 MHz NMRS10OD021508 · OD · UNIVERSITY OF TEXAS AT AUSTIN · PI SESSLER, JONATHAN L · 2016 to 2016
$529k
NIGMS NIH HHS R01 GM060595NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM125882NIGMS NIH HHS R01 GM129331NIH HHS S10 OD021508
6 · The paper itself

Abstract

The tautomerase superfamily (TSF) is a collection of enzymes and proteins that share a simple β-α-β structural scaffold. Most members are constructed from a single-core β-α-β motif or two consecutively fused β-α-β motifs in which the N-terminal proline (Pro-1) plays a key and unusual role as a catalytic residue. The cumulative evidence suggests that a gene fusion event took place in the evolution of the TSF followed by duplication (of the newly fused gene) to result in the diversification of activity that is seen today. Analysis of the sequence similarity network (SSN) for the TSF identified several linking proteins ("linkers") whose similarity links subgroups of these contemporary proteins that might hold clues about structure-function relationship changes accompanying the emergence of new activities. A previously uncharacterized pair of linkers (designated N1 and N2) was identified in the SSN that connected the 4-oxalocrotonate tautomerase (4-OT) and

Indexed as

Amino Acid SequenceBinding SitesCatalysisCatalytic DomainEvolution, MolecularHydrolasesIsomerasesKineticsMagnetic Resonance SpectroscopyModels, Chemical4-oxalocrotonate tautomerasecis-3-chloroacrylic acid dehalogenaseHydrolasesIsomerases

Identifiers

PMID34019384
PMCPMC8257045
OpenAlexW3162065565

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.