Evidence map›Paper›PMID 34019287›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Detection of Post-translational Modifications on MYC.

Colin J Daniel, Xiao-Xin Sun, Yingxiao Chen, Xiaoli Zhang, Mu-Shui Dai, Rosalie C Sears

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Colin J DanielDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.
Xiao-Xin SunDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.
Yingxiao ChenDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.
Xiaoli ZhangDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.
Mu-Shui DaiDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA. daim@ohsu.edu.
Rosalie C SearsDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA. searsr@ohsu.edu.
Oregon Health & Science University · US

Funding

Understanding the Impact of Microscale and Nanoscale Heterogeneity and ResistanceU54CA209988 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI HEISER, LAURA MADELINE · 2017 to 2021
$10.3M
Hydroxylation regulation of c-MycR01CA186241 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Mu-Shui Dai, ROSALIE C SEARS · 2015 to 2026
$4.2M
Comparative analysis between patient-derived models of pancreatic ductal adenocarcinomas and matched tumor specimensU01CA224012 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI BRODY, JONATHAN, COUSSENS, LISA M. · 2019 to 2023
$2.9M
The Role of post-translational activation of Myc in pancreatic cancerR01CA196228 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI SEARS, ROSALIE C · 2015 to 2019
$2.0M
c-Myc Phosphorylation Sites Regulate Its Apoptotic and Tumorigenic PotentialR01CA129040 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI SEARS, ROSALIE C · 2008 to 2012
$1.6M
Novel roles for USP36 in ribosome biogenesisR01GM130604 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAI, MU-SHUI · 2019 to 2022
$1.2M
NCI NIH HHS R01 CA129040NCI NIH HHS R01 CA186241NCI NIH HHS R01 CA196228NCI NIH HHS U01 CA224012NCI NIH HHS U54 CA209988
6 · The paper itself

Abstract

Detection of post-translational modifications in c-Myc is an invaluable tool in assessing Myc status, particularly in cancer. However, it can be challenging to detect these modifications. The evaluation of phosphorylation status of c-Myc can also be challenging with the current commercially available phosphorylation sensitive antibodies. Here, we describe protocols for the immunoprecipitation of endogenous c-Myc to probe for phosphorylation status, as well as the detection of ubiquitination and SUMOylation on c-Myc. We will also discuss the challenges of detecting phosphorylated c-Myc in formalin-fixed paraffin-embedded tissues by immunofluorescence and describe a protocol using a new rat monoclonal antibody we have generated suitable for this purpose.

Indexed as

Fluorescent Antibody TechniqueGenes, mycHumansImmunoprecipitationPhosphorylationProtein Processing, Post-TranslationalProteinsProto-Oncogene Proteins c-mycSumoylationUbiquitinationProteinsProto-Oncogene Proteins c-mycc-MycImmunofluorescenceImmunoprecipitationPhosphorylationSUMOylationUbiquitination

Identifiers

PMID34019287
PMCPMC13270995
OpenAlexW3163768540

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.