Evidence map›Paper›PMID 34018214›Full record

ArticleThe EMBO journal2021

Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1.

Antonio Galindo, Vicente J Planelles-Herrero, Gianluca Degliesposti, Sean Munro

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

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  13. Expanding the phenotypic spectrum ofJournal of medical genetics · 2023
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  16. Structure of the metazoan Rab7 GEF complex Mon1-Ccz1-Bulli.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Antonio GalindoMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-1108-652X
Vicente J Planelles-HerreroMRC Laboratory of Molecular Biology, Cambridge, UK.
Gianluca DegliespostiMRC Laboratory of Molecular Biology, Cambridge, UK.
Sean MunroMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0001-6160-5773
MRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105178783Medical Research Council MC_U105184326
6 · The paper itself

Abstract

The TRAPP complexes are nucleotide exchange factors that play essential roles in membrane traffic and autophagy. TRAPPII activates Rab11, and TRAPPIII activates Rab1, with the two complexes sharing a core of small subunits that affect nucleotide exchange but being distinguished by specific large subunits that are essential for activity in vivo. Crystal structures of core subunits have revealed the mechanism of Rab activation, but how the core and the large subunits assemble to form the complexes is unknown. We report a cryo-EM structure of the entire Drosophila TRAPPIII complex. The TRAPPIII-specific subunits TRAPPC8 and TRAPPC11 hold the catalytic core like a pair of tongs, with TRAPPC12 and TRAPPC13 positioned at the joint between them. TRAPPC2 and TRAPPC2L link the core to the two large arms, with the interfaces containing residues affected by disease-causing mutations. The TRAPPC8 arm is positioned such that it would contact Rab1 that is bound to the core, indicating how the arm could determine the specificity of the complex. A lower resolution structure of TRAPPII shows a similar architecture and suggests that the TRAPP complexes evolved from a single ur-TRAPP.

Indexed as

Cryoelectron MicroscopyDrosophila ProteinsGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateProtein Conformationrab1 GTP-Binding ProteinsVesicular Transport ProteinsDrosophila ProteinsGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine Triphosphaterab1 GTP-Binding ProteinsVesicular Transport Proteinsautophagyexchange factorGolgi complexmembrane trafficRab1

Identifiers

PMID34018214
PMCPMC8204870
OpenAlexW3163587459

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.