Evidence map›Paper›PMID 34017121›Full record

ArticleNature immunology2021

Repression of CTSG, ELANE and PRTN3-mediated histone H3 proteolytic cleavage promotes monocyte-to-macrophage differentiation.

Peggie Cheung, Steven Schaffert, Sarah E Chang, Mai Dvorak, Michele Donato, Claudia Macaubas, Mariko H Foecke, Tie-Mei Li, Lichao Zhang, John P Coan and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 100 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  12. Linker histone regulates the myeloid versus lymphoid bifurcation of multipotent hematopoietic stem and progenitors.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  15. Disseminated intravascular coagulation.Journal of intensive care · 2025
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 2 countries.

Peggie Cheung *Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Steven Schaffert *Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Sarah E Chang *Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Mai DvorakInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Michele DonatoInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-9968-6027
Claudia MacaubasProgram in Immunology, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-5472-8086
Mariko H FoeckeInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-9205-940X
Tie-Mei LiDepartment of Biology, Stanford University, Stanford, CA, USA.
Lichao ZhangChan Zuckerberg Biohub, Stanford, CA, USA.ORCID 0000-0003-1811-7568
John P CoanDepartment of Biology, Stanford University, Stanford, CA, USA.
Grant S SchulertDivision of Rheumatology, Cincinnati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Alexei A GromDivision of Rheumatology, Cincinnati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Lauren A HendersonDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Peter A NigrovicDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-2126-3702
Joshua E EliasChan Zuckerberg Biohub, Stanford, CA, USA.ORCID 0000-0002-8063-3259
Or GozaniDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1365-4463
Elizabeth D MellinsProgram in Immunology, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA. mellins@stanford.edu.ORCID 0000-0003-2577-139X
Purvesh KhatriInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. pkhatri@stanford.edu.ORCID 0000-0002-4143-4708
Paul J UtzInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. pjutz@stanford.edu.ORCID 0000-0003-1181-1565
Alex J KuoInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. alexjkuo0229@gmail.com.ORCID 0000-0003-4996-5578
Stanford University · USBoston Children's Hospital · USChan Zuckerberg Initiative (United States) · USCincinnati Children's Hospital Medical Center · USStanford Medicine · USInstitute of Infection and Immunity · CA

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Translational Incubator CoreU19AI109662 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2014 to 2019
$28.6M
Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Joint Biology Consortium Resource-based CenterP30AR070253 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic, Jeffrey Andrew Sparks · 2016 to 2026
$9.4M
Tissue Repository CoreP30AR070549 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI Grant Sanford Schulert · 2016 to 2026
$7.7M
Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
Function of Protein Methylation in Chromatin and Signaling RegulationR35GM139569 · NIGMS · STANFORD UNIVERSITY · PI Or P. Gozani · 2021 to 2026
$4.0M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI MAECKER, HOLDEN T. · 2014 to 2018
$3.6M
Bridging the gap between GWAS and mechanism in JIAR01AR073201 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic · 2019 to 2026
$3.2M
MUNC13-4 gene Polymorphisms in Macrophage Activation syndrome and Systemic JuveniR01AR059049 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI GROM, ALEXEI A · 2011 to 2015
$1.7M
CINCINNATI TRAINING PROGRAM IN PEDIATRIC RHEUMATOLOGYRESEARCHT32AR069512 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI ALEXEI A GROM, Grant Sanford Schulert · 2016 to 2026
$1.6M
A role for IL-1 in SJIA monocyte phenotypes: A RAPPORT ancillary studyR01AR061297 · NIAMS · STANFORD UNIVERSITY · PI MELLINS, ELIZABETH D · 2010 to 2013
$1.2M
NCI NIH HHS T32 CA009302NIAID NIH HHS R01 AI125197NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI109662NIAID NIH HHS U19 AI110491NIAMS NIH HHS K08 AR072075NIAMS NIH HHS K08 AR073339NIAMS NIH HHS P30 AR070253NIAMS NIH HHS P30 AR070549NIAMS NIH HHS R01 AR059049NIAMS NIH HHS R01 AR061297NIAMS NIH HHS R01 AR073201NIAMS NIH HHS T32 AR069512NIGMS NIH HHS R35 GM139569
6 · The paper itself

Abstract

Chromatin undergoes extensive reprogramming during immune cell differentiation. Here we report the repression of controlled histone H3 amino terminus proteolytic cleavage (H3ΔN) during monocyte-to-macrophage development. This abundant histone mark in human peripheral blood monocytes is catalyzed by neutrophil serine proteases (NSPs) cathepsin G, neutrophil elastase and proteinase 3. NSPs are repressed as monocytes mature into macrophages. Integrative epigenomic analysis reveals widespread H3ΔN distribution across the genome in a monocytic cell line and primary monocytes, which becomes largely undetectable in fully differentiated macrophages. H3ΔN is enriched at permissive chromatin and actively transcribed genes. Simultaneous NSP depletion in monocytic cells results in H3ΔN loss and further increase in chromatin accessibility, which likely primes the chromatin for gene expression reprogramming. Importantly, H3ΔN is reduced in monocytes from patients with systemic juvenile idiopathic arthritis, an autoinflammatory disease with prominent macrophage involvement. Overall, we uncover an epigenetic mechanism that primes the chromatin to facilitate macrophage development.

Indexed as

AdolescentArthritis, JuvenileCathepsin GCell DifferentiationCell NucleusChildChild, PreschoolChromatinCRISPR-Cas SystemsEnzyme AssaysEpigenesis, GeneticEpigenomicsFemaleGene Knockout TechniquesHistonesHumansCathepsin GChromatinCTSG protein, humanELANE protein, humanHistonesLeukocyte ElastaseMyeloblastinRecombinant Proteins

Identifiers

PMID34017121
PMCPMC8159908
OpenAlexW3162741821

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.