Evidence map›Paper›PMID 34017037›Full record

ArticleScientific reports2021

Whole transcriptome RNA-seq reveals key regulatory factors involved in type 2 diabetes pathology in peripheral fat of Asian Indians.

Aditya Saxena, Nitish Mathur, Pradeep Tiwari, Sandeep Kumar Mathur

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Aditya Saxena *Department of Computer Engineering and Applications, Institute of Engineering and Technology, GLA University, Mathura, 281406, India.
Nitish MathurDepartment of Endocrinology, Sawai Man Singh Medical College and Hospital, Jaipur, 302004, India.
Pradeep Tiwari *Department of Endocrinology, Sawai Man Singh Medical College and Hospital, Jaipur, 302004, India.
Sandeep Kumar MathurDepartment of Endocrinology, Sawai Man Singh Medical College and Hospital, Jaipur, 302004, India. drsandeepmathur@rediffmail.com.
Sawai ManSingh Medical College and Hospital · INGLA University · INManipal University Jaipur

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The prevalence of Type 2 Diabetes has reached an epidemic proportion particularly in south Asian countries. We have earlier shown that the anatomical fat distribution, termed 'thin fat phenotype' in this population indeed plays a major role for their T2D-predisposition it is indeed the sick fat or adiposopathy, which is the root cause of metabolic syndrome and diabetes and affects both-peripheral, as well as visceral adipose tissue compartments. In present study, we have attempted to unravel the altered regulatory mechanisms at the level of transcription factors, and miRNAs those may likely accounts to T2D pathophysiology in femoral subcutaneous adipose tissue. We prioritized transcription factors and protein kinases as likely upstream regulators of obtained differentially expressed genes in this RNA-seq study. An inferred network of these upstream regulators was then derived and the role of TFs and miRNAs in T2D pathophysiology was explored. In conclusions, this RNS-Seq study finds that peripheral subcutaneous adipose tissue among Asian Indians show pathology characterized by altered lipid, glucose and protein metabolism, adipogenesis defect and inflammation. A network of regulatory transcription factors, protein kinases and microRNAs have been imputed which converge on the process of adipogenesis. As the majority of these genes also showed altered expression in diabetics and some of them are also circulatory, therefore they deserve further investigation for potential clinical diagnostic and therapeutic applications.

Indexed as

RNA-SeqDiabetes Mellitus, Type 2Gene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenome-Wide Association StudyHumansIndiaMicroRNAsSubcutaneous FatTranscription FactorsTranscriptomeMicroRNAsTranscription Factors

Identifiers

PMID34017037
PMCPMC8137704
OpenAlexW3162665611

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.