Evidence map›Paper›PMID 34016712›Full record

ArticleRMD open2021

Validation of a machine learning approach to estimate Systemic Lupus Erythematosus Disease Activity Index score categories and application in a real-world dataset.

Pedro Alves, Jigar Bandaria, Michelle B Leavy, Benjamin Gliklich, Costas Boussios, Zhaohui Su, Gary Curhan

Abstract read
In one paragraph

Article in RMD open, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Lupus Nephritis Risk Factors and Biomarkers: An Update.International journal of molecular sciences · 2023
    Review
  9. Application of Machine Learning Models in Systemic Lupus Erythematosus.International journal of molecular sciences · 2023
    Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Pedro AlvesData Science, OM1 Inc, Boston, Massachusetts, USA.
Jigar BandariaData Science, OM1 Inc, Boston, Massachusetts, USA.
Michelle B LeavyResearch, OM1 Inc, Boston, Massachusetts, USA mleavy@om1.com.ORCID 0000-0003-1927-7248
Benjamin GliklichResearch, Noble and Greenough School, Dedham, Massachusetts, USA.
Costas BoussiosData Science, OM1 Inc, Boston, Massachusetts, USA.
Zhaohui SuBiostatistics, OM1 Inc, Boston, Massachusetts, USA.
Gary CurhanResearch, OM1 Inc, Boston, Massachusetts, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveUse of the Systemic Lupus Erythematosus Disease Activity Index (SLEDAI) in routine clinical practice is inconsistent, and availability of clinician-recorded SLEDAI scores in real-world datasets is limited. This study aimed to validate a machine learning model to estimate SLEDAI score categories using clinical notes and to apply the model to a large, real-world dataset to generate estimated score categories for use in future research studies.

methodsA machine learning model was developed to estimate an individual patient's SLEDAI score category (no activity, mild activity, moderate activity or high/very high activity) for a specific encounter date using clinical notes. A training cohort of 3504 encounters and a separate validation cohort of 1576 encounters were created from the OM1 SLE Registry. Model performance was assessed using the area under the receiver operating characteristic curve (AUC), calculated using a binarised version of the outcome that sets the positive class to be those records with clinician-recorded SLEDAI scores >5 and the negative class to be records with scores ≤5. Model performance was evaluated by categorising the scores into the four disease activity categories and by calculating the Spearman's R value and Pearson's R value.

resultsThe AUC for the two categories was 0.93 for the development cohort and 0.91 for the validation cohort. The model had a Spearman's R value of 0.7 and a Pearson's R value of 0.7 when calculated using the four disease activity categories.

conclusionThe model performs well when estimating SLEDAI score categories using unstructured clinical notes.

Indexed as

Lupus Erythematosus, SystemicCohort StudiesHumansMachine LearningROC CurveSeverity of Illness Indexepidemiologyhealthcarelupus erythematosusoutcome assessmentsystemic

Identifiers

PMID34016712
PMCPMC8141448

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.