Evidence map›Paper›PMID 34016457›Full record

ArticleSurgery2021

Genomics of Black American colon cancer disparities: An RNA sequencing (RNA-Seq) study from an academic, tertiary referral center.

Ivy N Haskins, Bi-Dar Wang, James P Bernot, Edmund Cauley, Anelia Horvath, John H Marks, Norman H Lee, Samir Agarwal

Open access · greenAbstract read
In one paragraph

Article in Surgery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ivy N HaskinsDepartment of Surgery, George Washington University, Washington, DC; Department of Surgery, University of Nebraska Medical Center, Omaha, NE. Electronic address: https://twitter.com/IvyNHaskinsMD.
Bi-Dar WangDepartment of Pharmacology & Physiology, School of Medicine and Health Sciences, GW Cancer Center, George Washington University, Washington, DC.
James P BernotDepartment of Pharmacology & Physiology, School of Medicine and Health Sciences, GW Cancer Center, George Washington University, Washington, DC.
Edmund CauleyDepartment of Pharmacology & Physiology, School of Medicine and Health Sciences, GW Cancer Center, George Washington University, Washington, DC.
Anelia HorvathDepartment of Pharmacology & Physiology, School of Medicine and Health Sciences, GW Cancer Center, George Washington University, Washington, DC.
John H MarksDivision of Colorectal Surgery, Lankenau Medical Center, Wynnewood, PA. Electronic address: https://twitter.com/JohnMarksMD.
Norman H LeeDepartment of Pharmacology & Physiology, School of Medicine and Health Sciences, GW Cancer Center, George Washington University, Washington, DC. Electronic address: nhlee@gwu.edu.
Samir AgarwalDepartment of Surgery, George Washington University, Washington, DC; Department of Colorectal Surgery, Cleveland Clinic Florida, Weston, FL. Electronic address: agarwas2@ccf.org.
George Washington University · USTwitter (United States) · US

Funding

Consequences and mechanism of aberrant splicing in African American prostate cancer disparitiesR01CA204806 · NCI · GEORGE WASHINGTON UNIVERSITY · PI GARCIA-BLANCO, MARIANO A., LEE, NORMAN H · 2017 to 2021
$1.8M
Aberrant Splice Variants as Potential Precision Biomarkers for Aggressive Prostate Cancers in African American PatientsSC1GM127256 · NIGMS · UNIVERSITY OF MARYLAND EASTERN SHORE · PI WANG, BI-DAR · 2019 to 2022
$1.6M
NCI NIH HHS R01 CA204806NIGMS NIH HHS SC1 GM127256
6 · The paper itself

Abstract

backgroundBlack Americans have a higher incidence and mortality rate from colorectal cancer compared to their non-Hispanic White American counterparts. Even when controlling for sociodemographic differences between these 2 populations, Black Americans remain disproportionately affected by colorectal cancer. The purpose of our study was to determine if differences in gene expression between Black American and non-Hispanic White American colon cancer specimens could help explain differences in the incidence and mortality rate between these 2 populations.

methodsBlack Americans and non-Hispanic White Americans undergoing colon resection for stages I, II, or III colon cancer at a single institution were identified. Black American and non-Hispanic White American patients were matched for age, sex, and colon cancer stage to minimize the risk of confounding variables. Tissue samples were obtained at the time of colon resection and were analyzed using RNA sequencing to determine if there were differences in the expression of genes and biologic processes between the 2 groups.

resultsA total of 17 colon cancer specimens were analyzed; 8 (47.1%) patients were Black Americans. A total of 456 genes were identified as being expressed differently (ie, up or downregulated) in Black American compared to non-Hispanic White American colon cancer specimens. Moreover, 500 different genetic pathways were noted to be significantly over-represented with differentially expressed genes in our comparison of Black American and non-Hispanic White American colon cancer specimens, the majority of which plays a role in inflammation and immune cell function.

conclusionSignificant differences in gene expression and genetic pathways exist between Black Americans and non-Hispanic White Americans. Additional and multi-institutional and registry-based studies are needed to validate our findings and to further elucidate the contribution that these differences have to the overall incidence and mortality rate from colon cancer in these 2 patient populations.

Indexed as

Healthcare DisparitiesTertiary Care CentersAgedBlack or African AmericanColonic NeoplasmsColonoscopyFemaleGenomicsHumansIncidenceMaleMiddle AgedNeoplasm GradingRetrospective StudiesRNA, NeoplasmSequence Analysis, RNARNA, Neoplasm

Identifiers

PMID34016457
PMCPMC8490290
OpenAlexW3160579211

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.