Evidence map›Paper›PMID 34015309›Full record

ArticleCell chemical biology2021

Targeting allostery in the Dynein motor domain with small molecule inhibitors.

Cristina C Santarossa, Keith J Mickolajczyk, Jonathan B Steinman, Linas Urnavicius, Nan Chen, Yasuhiro Hirata, Yoshiyuki Fukase, Nicolas Coudray, Damian C Ekiert, Gira Bhabha and 1 more

Open access · greenAbstract read
In one paragraph

Article in Cell chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Role of motor proteins in human cancers.Saudi journal of biological sciences · 2022
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Cristina C SantarossaLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA; Tri-Institutional PhD program in Chemical Biology, The Rockefeller University, New York, NY 10065, USA.
Keith J MickolajczykLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA.
Jonathan B SteinmanLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA.
Linas UrnaviciusLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA.
Nan ChenLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA.
Yasuhiro HirataTri-Institutional Therapeutics Discovery Institute, New York, NY 10065, USA.
Yoshiyuki FukaseTri-Institutional Therapeutics Discovery Institute, New York, NY 10065, USA.
Nicolas CoudrayDepartment of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY 10016, USA; Applied Bioinformatics Laboratories, New York University School of Medicine, New York, NY 10016, USA.
Damian C EkiertDepartment of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY 10016, USA.
Gira BhabhaDepartment of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY 10016, USA. Electronic address: gira.bhabha@gmail.com.
Tarun M KapoorLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA. Electronic address: kapoor@rockefeller.edu.
Rockefeller University · USNew York University · USTri-Institutional Therapeutics Discovery Institute · US

Funding

Chemical Biology of Cell Division - Revision - 2R35GM130234 · NIGMS · ROCKEFELLER UNIVERSITY · PI TARUN M. KAPOOR · 2019 to 2026
$6.0M
Unravelling lipid trafficking for the bacterial outer membraneR35GM128777 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Damian Ekiert · 2018 to 2026
$4.1M
Studying chromosome function using chemical biologyR01GM098579 · NIGMS · ROCKEFELLER UNIVERSITY · PI KAPOOR, TARUN M. · 2011 to 2018
$3.3M
Structure and mechanism of cytoplasmic and axonemal dyneinsR00GM112982 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BHABHA, GIRA · 2017 to 2019
$747k
A biophysical approach to elucidating the molecular mechanisms of mitotic inhibitor targetsK00CA223018 · NCI · ROCKEFELLER UNIVERSITY · PI MICKOLAJCZYK, KEITH JOSEPH · 2018 to 2021
$379k
Crystallization Robot for the Structural Biology Resource Center at RockefellerS10RR027037 · NCRR · ROCKEFELLER UNIVERSITY · PI OREN, DEENA ABELLS · 2010 to 2010
$147k
NCI NIH HHS K00 CA223018NCRR NIH HHS S10 RR027037NIGMS NIH HHS R00 GM112982NIGMS NIH HHS R01 GM098579NIGMS NIH HHS R35 GM128777NIGMS NIH HHS R35 GM130234
6 · The paper itself

Abstract

Cytoplasmic dyneins are AAA (ATPase associated with diverse cellular activities) motor proteins responsible for microtubule minus-end-directed intracellular transport. Dynein's unusually large size, four distinct nucleotide-binding sites, and conformational dynamics pose challenges for the design of potent and selective chemical inhibitors. Here we use structural approaches to develop a model for the inhibition of a well-characterized S. cerevisiae dynein construct by pyrazolo-pyrimidinone-based compounds. These data, along with functional assays of dynein motility and mutagenesis studies, suggest that the compounds inhibit dynein by engaging the regulatory ATPase sites in the AAA3 and AAA4 domains, and not by interacting with dynein's main catalytic site in the AAA1 domain. A double Walker B mutation of the AAA3 and AAA4 sites substantially reduces enzyme activity, suggesting that targeting these regulatory domains is sufficient to inhibit dynein. Our findings reveal how chemical inhibitors can be designed to disrupt allosteric communication across dynein's AAA domains.

Indexed as

Allosteric RegulationBinding SitesCatalytic DomainCryoelectron MicroscopyDyneinsHumansMolecular Docking SimulationMutagenesis, Site-DirectedProtein BindingPyrazolesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSmall Molecule LibrariesDyneinsPyrazolesSaccharomyces cerevisiae ProteinsSmall Molecule LibrariesAAA ATPasescryo-EMDyneinmotor proteinssingle moleculeX-ray crystallography

Identifiers

PMID34015309
PMCPMC8542630
OpenAlexW3161671931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.