Evidence map›Paper›PMID 34012505›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2020

A UNIVARIATE PERSISTENT BRAIN NETWORK FEATURE BASED ON THE AGGREGATED COST OF CYCLES FROM THE NESTED FILTRATION NETWORKS.

Mohammad Farazi, Liang Zhan, Natasha Lepore, Paul M Thompson, Yalin Wang

Open access · greenAbstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mohammad FaraziSchool of Computing, Informatics, and Decision Systems Eng., Arizona State Univ., Tempe, AZ.
Liang ZhanElectrical and Computer Engineering, Univ. of Pittsburgh, Pittsburgh, PA.
Natasha LeporeCIBORG Lab, Dept. of of Radiology, Children's Hospital Los Angeles, Los Angeles, CA.
Paul M ThompsonImaging Genetics Center, Inst. for Neuroimaging and Informatics, Univ. of Southern California, Los Angeles, CA.
Yalin WangSchool of Computing, Informatics, and Decision Systems Eng., Arizona State Univ., Tempe, AZ.
Arizona State University · USUniversity of Pittsburgh · USUniversity of Southern California · US

Funding

Training U54EB020403 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2014 to 2018
$10.1M
Multi-Source Sparse Learning to Identify MCI and Predict DeclineRF1AG051710 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THOMPSON, PAUL M, WANG, YALIN · 2016 to 2016
$2.8M
Predicting the early childhood outcomes of preterm brain shape abnormalitiesR01EB025032 · NIBIB · CHILDREN'S HOSPITAL OF LOS ANGELES · PI LEPORE, NATASHA · 2017 to 2020
$2.6M
NIA NIH HHS RF1 AG051710NIBIB NIH HHS R01 EB025032NIBIB NIH HHS U54 EB020403
6 · The paper itself

Abstract

A threshold-free feature in brain network analysis can help circumvent the curse of arbitrary network thresholding for binary network conversions. Here, Persistent Homology is the inspiration for defining a new aggregation cost based on the number of cycles, or for tracking the first Betti number in a nested filtration network within the graph. Our theoretical analysis shows that the proposed aggregated cost of cycles (ACC) is monotonically increasing and thus we define a univariate persistent feature based on the shape of ACC. The proposed statistic has advantages compared to the First Betti Number Plot (BNP1), which only tracks the total number of cycles at each filtration. We show that our method is sensitive to both the topology of modular networks and the difference in the number of cycles in a network. Our method outperforms its counterparts in a synthetic dataset, while in a real-world one it achieves results comparable with the BNP1. Our proposed framework enriches univariate measures for discovering brain network dissimilarities for better categorization of distinct stages in Alzheimer's Disease (AD).

Indexed as

Aggregated CostBrain network analysisGraph TheoryPersistent Homology

Identifiers

PMID34012505
PMCPMC8130864
OpenAlexW3028125451

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.