Evidence map›Paper›PMID 34011433›Full record

ArticleeLife2021

Standardized and reproducible measurement of decision-making in mice.

International Brain Laboratory, Valeria Aguillon-Rodriguez, Dora Angelaki, Hannah Bayer, Niccolo Bonacchi, Matteo Carandini, Fanny Cazettes, Gaelle Chapuis, Anne K Churchland, Yang Dan and 28 more

Erratum issuedAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 140 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Auditory processing in rodent models of autism: a systematic review.Journal of neurodevelopmental disorders · 2022
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80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

38 authors.

International Brain Laboratory
Valeria Aguillon-RodriguezCold Spring Harbor Laboratory, New York, United States.
Dora AngelakiCenter for Neural Science, New York University, New York, United States.ORCID https://orcid.org/0000-0002-9650-8962
Hannah BayerZuckerman Institute, Columbia University, New York, United States.ORCID https://orcid.org/0000-0002-5644-4124
Niccolo BonacchiChampalimaud Centre for the Unknown, Lisbon, Portugal.
Matteo CarandiniUCL Institute of Ophthalmology, University College London, London, United Kingdom.ORCID https://orcid.org/0000-0003-4880-7682
Fanny CazettesChampalimaud Centre for the Unknown, Lisbon, Portugal.ORCID https://orcid.org/0000-0002-9648-4761
Gaelle ChapuisWolfson Institute for Biomedical Research, University College London, London, United Kingdom.
Anne K ChurchlandCold Spring Harbor Laboratory, New York, United States.ORCID https://orcid.org/0000-0002-3205-3794
Yang DanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID https://orcid.org/0000-0002-3818-877X
Eric DewittChampalimaud Centre for the Unknown, Lisbon, Portugal.
Mayo FaulknerWolfson Institute for Biomedical Research, University College London, London, United Kingdom.
Hamish ForrestUCL Institute of Ophthalmology, University College London, London, United Kingdom.
Laura HaetzelPrinceton Neuroscience Institute, Princeton University, Princeton, United States.
Michael HäusserWolfson Institute for Biomedical Research, University College London, London, United Kingdom.ORCID https://orcid.org/0000-0002-2673-8957
Sonja B HoferSainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom.
Fei HuDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID https://orcid.org/0000-0001-7827-9548
Anup KhanalCold Spring Harbor Laboratory, New York, United States.ORCID https://orcid.org/0000-0002-8929-7984
Christopher KrasniakCold Spring Harbor Laboratory, New York, United States.
Ines LaranjeiraChampalimaud Centre for the Unknown, Lisbon, Portugal.
Zachary F MainenChampalimaud Centre for the Unknown, Lisbon, Portugal.ORCID https://orcid.org/0000-0001-7913-9109
Guido MeijerChampalimaud Centre for the Unknown, Lisbon, Portugal.
Nathaniel J MiskaSainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom.
Thomas D Mrsic-FlogelSainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom.
Masayoshi MurakamiChampalimaud Centre for the Unknown, Lisbon, Portugal.
Jean-Paul NoelCenter for Neural Science, New York University, New York, United States.ORCID https://orcid.org/0000-0001-5297-3363
Alejandro Pan-VazquezPrinceton Neuroscience Institute, Princeton University, Princeton, United States.
Cyrille RossantUCL Queen Square Institute of Neurology, University College London, London, United Kingdom.
Joshua SandersSanworks LLC, New York, United States.
Karolina SochaUCL Institute of Ophthalmology, University College London, London, United Kingdom.
Rebecca TerryUCL Queen Square Institute of Neurology, University College London, London, United Kingdom.
Anne E UraiCold Spring Harbor Laboratory, New York, United States.ORCID https://orcid.org/0000-0001-5270-6513
Hernando VergaraSainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom.
Miles WellsUCL Queen Square Institute of Neurology, University College London, London, United Kingdom.
Christian J WilsonCenter for Neural Science, New York University, New York, United States.
Ilana B WittenPrinceton Neuroscience Institute, Princeton University, Princeton, United States.ORCID https://orcid.org/0000-0003-0548-2160
Lauren E WoolUCL Queen Square Institute of Neurology, University College London, London, United Kingdom.
Anthony M ZadorCold Spring Harbor Laboratory, New York, United States.

Funding

CSHL Watson School of Biological SciencesT32GM065094 · NIGMS · COLD SPRING HARBOR LABORATORY · PI GANN, ALEXANDER · 2002 to 2021
$4.8M
NIGMS NIH HHS T32 GM065094Wellcome Trust 209558Wellcome Trust 209558/Z/17/ZWellcome Trust 216324
6 · The paper itself

Abstract

Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements of mouse behavior. Here, we show that a standardized task to probe decision-making in mice produces reproducible results across multiple laboratories. We adopted a task for head-fixed mice that assays perceptual and value-based decision making, and we standardized training protocol and experimental hardware, software, and procedures. We trained 140 mice across seven laboratories in three countries, and we collected 5 million mouse choices into a publicly available database. Learning speed was variable across mice and laboratories, but once training was complete there were no significant differences in behavior across laboratories. Mice in different laboratories adopted similar reliance on visual stimuli, on past successes and failures, and on estimates of stimulus prior probability to guide their choices. These results reveal that a complex mouse behavior can be reproduced across multiple laboratories. They establish a standard for reproducible rodent behavior, and provide an unprecedented dataset and open-access tools to study decision-making in mice. More generally, they indicate a path toward achieving reproducibility in neuroscience through collaborative open-science approaches.

Indexed as

Behavior, AnimalDecision MakingAnimalsBiomedical ResearchCuesFemaleLearningMaleMiceMice, Inbred C57BLModels, AnimalNeurosciencesObserver VariationPhotic StimulationReproducibility of ResultsTime Factorsbehaviordecision makingmouseneurosciencereproducibility

Identifiers

PMID34011433
PMCPMC8137147

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.