Evidence map›Paper›PMID 34011400›Full record

ArticleGenome medicine2021

Single-cell characterization of macrophages in glioblastoma reveals MARCO as a mesenchymal pro-tumor marker.

Andrew X Chen, Robyn D Gartrell, Junfei Zhao, Pavan S Upadhyayula, Wenting Zhao, Jinzhou Yuan, Hanna E Minns, Athanassios Dovas, Jeffrey N Bruce, Anna Lasorella and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 119 citations in OpenAlex.

  1. Article
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  3. FAPExperimental & molecular medicine · 2026
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Andrew X Chen *Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Robyn D Gartrell *Department of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Junfei ZhaoDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Pavan S UpadhyayulaDepartment of Neurological Surgery, Columbia University Irving Medical Center, New York, NY, USA.
Wenting ZhaoDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Jinzhou YuanDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Hanna E MinnsDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Athanassios DovasDepartment of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Jeffrey N BruceDepartment of Neurological Surgery, Columbia University Irving Medical Center, New York, NY, USA.
Anna LasorellaDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Antonio IavaroneDepartment of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Peter CanollDepartment of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Peter A SimsDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Raul RabadanDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA. rr2579@cumc.columbia.edu.
Columbia University Irving Medical Center · USCancer Genetics (United States) · USColumbia University · USNeurological Surgery · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
Institutional Career Development CoreKL2TR001874 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GENKINGER, JEANINE M., SHIMBO, DAICHI · 2016 to 2025
$13.6M
Systematic pharmacological targeting of the core mechanisms responsible for maintaining cancer cell stateU54CA209997 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA, HONIG, BARRY H · 2016 to 2021
$10.9M
Topology of Cancer Evolution and HeterogeneityU54CA193313 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2015 to 2020
$10.4M
Systematic Identification and Pharmacological Targeting of Tumor Dependencies for Precision Cancer MedicineU01CA217858 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2017 to 2021
$6.1M
Single Cell Analysis of the Infiltrative Margins of Glioblastoma and Post Treatment RecurrenceR01NS103473 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JEFFREY N BRUCE, Peter Canoll · 2017 to 2026
$4.3M
Identification and modeling of driver genetic modules in glioblastomaR01CA179044 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2014 to 2018
$2.3M
(PQB5) Reconstruction of Evolutionary Networks using Cross-Sectional Genomic DataR01CA185486 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LASORELLA, ANNA, RABADAN, RAUL · 2014 to 2017
$2.1M
NCATS NIH HHS KL2 TR001874NCI NIH HHS U01 CA217858NCI NIH HHS U54 CA209997NIGMS NIH HHS T32 GM007367NIH HHS R01 CA179044NIH HHS R01 CA185486NIH HHS R01 NS103473NIH HHS U54 CA193313NIH HHS U54 CA209997
6 · The paper itself

Abstract

backgroundMacrophages are the most common infiltrating immune cells in gliomas and play a wide variety of pro-tumor and anti-tumor roles. However, the different subpopulations of macrophages and their effects on the tumor microenvironment remain poorly understood.

methodsWe combined new and previously published single-cell RNA-seq data from 98,015 single cells from a total of 66 gliomas to profile 19,331 individual macrophages.

resultsUnsupervised clustering revealed a pro-tumor subpopulation of bone marrow-derived macrophages characterized by the scavenger receptor MARCO, which is almost exclusively found in IDH1-wild-type glioblastomas. Previous studies have implicated MARCO as an unfavorable marker in melanoma and non-small cell lung cancer; here, we find that bulk MARCO expression is associated with worse prognosis and mesenchymal subtype. Furthermore, MARCO expression is significantly altered over the course of treatment with anti-PD1 checkpoint inhibitors in a response-dependent manner, which we validate with immunofluorescence imaging.

conclusionsThese findings illustrate a novel macrophage subpopulation that drives tumor progression in glioblastomas and suggest potential therapeutic targets to prevent their recruitment.

Indexed as

Biomarkers, TumorSingle-Cell AnalysisCell CommunicationFluorescent Antibody TechniqueGene Expression ProfilingGene Expression Regulation, NeoplasticGlioblastomaHigh-Throughput Nucleotide SequencingHumansImmunohistochemistryIsocitrate DehydrogenaseMutationPrognosisReceptors, ImmunologicTumor-Associated MacrophagesTumor MicroenvironmentBiomarkers, TumorIDH1 protein, humanIsocitrate DehydrogenaseMARCO protein, humanReceptors, ImmunologicCancer immunotherapyGlioblastomaMacrophagesSingle-cell RNA-seq

Identifiers

PMID34011400
PMCPMC8136167
OpenAlexW3161121929

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.