Evidence map›Paper›PMID 34010645›Full record

ArticleCell reports2021

The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin.

Chun-Min Shan, Jin-Kwang Kim, Jiyong Wang, Kehan Bao, Yadong Sun, Huijie Chen, Jia-Xing Yue, Alessandro Stirpe, Zhiguo Zhang, Chao Lu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Minimal requirements for the epigenetic inheritance of engineered silent chromatin domains.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Chun-Min ShanDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Jin-Kwang KimDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, CA 92697, USA.
Jiyong WangDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Kehan BaoDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Yadong SunDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Huijie ChenDepartment of Pathology, Columbia University, New York, NY 10068, USA.
Jia-Xing YueUniversité Côte d'Azur, CNRS, INSERM, IRCAN, Nice 06107, France.
Alessandro StirpeLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester LE1 9HN, UK.
Zhiguo ZhangInstitute for Cancer Genetics, Columbia University Irving Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY 10032, USA; Department of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA; Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Chao LuHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY 10032, USA; Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Thomas SchalchLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester LE1 9HN, UK.
Gianni LitiUniversité Côte d'Azur, CNRS, INSERM, IRCAN, Nice 06107, France.
Peter L NagyDepartment of Pathology, Columbia University, New York, NY 10068, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Feng QiaoDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, CA 92697, USA.
Songtao JiaDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: sj2274@columbia.edu.
Columbia University · USCentre National de la Recherche Scientifique · FRColumbia University Irving Medical Center · USUniversity of California, Irvine · USUniversity of Leicester · GB

Funding

Mechanisms of Epigenetic inheritanceR35GM118015 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Zhiguo Zhang · 2016 to 2026
$9.5M
Structural and functional studies of mRNA processing, stability and quality controlR35GM118093 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIANG TONG · 2016 to 2026
$8.5M
Mechanism of heterochromatin assembly and oncogenic histone mutationsR35GM126910 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Songtao Jia · 2018 to 2026
$3.8M
Molecular Mechanisms of Telomere Length HomeostasisR01GM098943 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI QIAO, FENG · 2012 to 2020
$3.8M
NIGMS NIH HHS R01 GM098943NIGMS NIH HHS R35 GM118015NIGMS NIH HHS R35 GM118093NIGMS NIH HHS R35 GM126910
6 · The paper itself

Abstract

Oncogenic histone lysine-to-methionine mutations block the methylation of their corresponding lysine residues on wild-type histones. One attractive model is that these mutations sequester histone methyltransferases, but genome-wide studies show that mutant histones and histone methyltransferases often do not colocalize. Using chromatin immunoprecipitation sequencing (ChIP-seq), here, we show that, in fission yeast, even though H3K9M-containing nucleosomes are broadly distributed across the genome, the histone H3K9 methyltransferase Clr4 is mainly sequestered at pericentric repeats. This selective sequestration of Clr4 depends not only on H3K9M but also on H3K14 ubiquitylation (H3K14ub), a modification deposited by a Clr4-associated E3 ubiquitin ligase complex. In vitro, H3K14ub synergizes with H3K9M to interact with Clr4 and potentiates the inhibitory effects of H3K9M on Clr4 enzymatic activity. Moreover, binding kinetics show that H3K14ub overcomes the Clr4 aversion to H3K9M and reduces its dissociation. The selective sequestration model reconciles previous discrepancies and demonstrates the importance of protein-interaction kinetics in regulating biological processes.

Indexed as

Cell Cycle ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesMutationSchizosaccharomyces pombe ProteinsUbiquitinationCell Cycle Proteinsclr4 protein, S pombeHeterochromatinHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesSchizosaccharomyces pombe Proteins

Identifiers

PMID34010645
PMCPMC8167812
OpenAlexW3160199470

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.