Evidence map›Paper›PMID 34010595›Full record

ArticleCell host & microbe2021

Western diet induces Paneth cell defects through microbiome alterations and farnesoid X receptor and type I interferon activation.

Ta-Chiang Liu, Justin T Kern, Umang Jain, Naomi M Sonnek, Shanshan Xiong, Katherine F Simpson, Kelli L VanDussen, Emma S Winkler, Talin Haritunians, Atika Malique and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed, 1 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 1 synthesis or guideline pooled it, 156 citations in OpenAlex.

  1. Pooled it
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  9. Regulation of Tph cell differentiation via farnesoid X receptor of dendritic cells in inflammatory bowel disease.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
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55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Ta-Chiang LiuDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA. Electronic address: ta-chiang.liu@wustl.edu.
Justin T KernDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Umang JainDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Naomi M SonnekDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Shanshan XiongDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Katherine F SimpsonDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Kelli L VanDussenDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Emma S WinklerDepartment of Medicine, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Talin HarituniansThe F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles 90048, USA.
Atika MaliqueDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Qiuhe LuDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Yo SasakiDepartment of Genetics, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Chad StorerDepartment of Genetics, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Michael S DiamondDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA; Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Richard D HeadDepartment of Genetics, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Dermot P B McGovernThe F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles 90048, USA.
Thaddeus S StappenbeckDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA. Electronic address: stappet@ccf.org.
Washington University in St. Louis · USCedars-Sinai Medical Center · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
TRAINING PROGRAM IN IMMUNOLOGY AND IMMUNOGENETICST32AI007163 · NIAID · WASHINGTON UNIVERSITY · PI Kenneth M Murphy, Kodi S Ravichandran · 1985 to 2026
$14.8M
Utilizing the Phenomics of IBD to Enhance Gene DiscoveryU01DK062413 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI Dermot Patrick McGovern · 2002 to 2026
$12.2M
Structure-Function Analysis of Mxra8 Interaction with Alphaviruses.R01AI143673 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, FREMONT, DAVED H. · 2019 to 2025
$6.5M
Chikungunya Virus Replication and PathogenesisR01AI123348 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DERMODY, TERENCE S., DIAMOND, MICHAEL S · 2016 to 2020
$3.7M
IFN Dependent Control of Acute and Chronic Chikungunya Virus Induced DiseaseR01AI127513 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, LENSCHOW, DEBORAH J · 2017 to 2020
$2.1M
Paneth cell phenotype as a predictive biomarker for ulcerative colitisR01DK124274 · NIDDK · WASHINGTON UNIVERSITY · PI LIU, TA-CHIANG · 2020 to 2023
$1.5M
Cellular and molecular mechanisms of cigarette smoking-induced Paneth cell abnormalityR01DK125296 · NIDDK · WASHINGTON UNIVERSITY · PI LIU, TA-CHIANG · 2020 to 2023
$1.4M
DEFINING THE BASIS OF EPITHELIAL DEFECTS IN CROHN'S DISEASE PATIENTSK01DK109081 · NIDDK · WASHINGTON UNIVERSITY · PI VANDUSSEN, KELLI LYNN · 2016 to 2020
$737k
Regulation of Antiviral Responses in Plasmacytoid Dendritic Cells to Chikungunya Virus by the Gut MicrobiotaF30AI152327 · NIAID · WASHINGTON UNIVERSITY · PI WINKLER, EMMA SUENING · 2021 to 2022
$84k
NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NIAID NIH HHS F30 AI152327NIAID NIH HHS R01 AI123348NIAID NIH HHS R01 AI127513NIAID NIH HHS R01 AI143673NIAID NIH HHS T32 AI007163NIDDK NIH HHS K01 DK109081NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK124274NIDDK NIH HHS R01 DK125296NIDDK NIH HHS U01 DK062413
6 · The paper itself

Abstract

Intestinal Paneth cells modulate innate immunity and infection. In Crohn's disease, genetic mutations together with environmental triggers can disable Paneth cell function. Here, we find that a western diet (WD) similarly leads to Paneth cell dysfunction through mechanisms dependent on the microbiome and farnesoid X receptor (FXR) and type I interferon (IFN) signaling. Analysis of multiple human cohorts suggests that obesity is associated with Paneth cell dysfunction. In mouse models, consumption of a WD for as little as 4 weeks led to Paneth cell dysfunction. WD consumption in conjunction with Clostridium spp. increased the secondary bile acid deoxycholic acid levels in the ileum, which in turn inhibited Paneth cell function. The process required excess signaling of both FXR and IFN within intestinal epithelial cells. Our findings provide a mechanistic link between poor diet and inhibition of gut innate immunity and uncover an effect of FXR activation in gut inflammation.

Indexed as

AnimalsBile Acids and SaltsCells, CulturedDiet, High-FatDiet, WesternDisease Models, AnimalGastrointestinal MicrobiomeGene Expression ProfilingHumansImmunity, InnateInterferon Type IIntestinal MucosaMiceMice, Inbred C57BLObesityPaneth CellsBile Acids and SaltsInterferon Type IReceptor, Farnesoid X-ActivatedReceptors, Cytoplasmic and Nuclearcell-intrinsichigh fat dietmetabolismmicrobiotamyeloid cellsobesityorganoidstranscriptomics

Identifiers

PMID34010595
PMCPMC8192497
OpenAlexW3161415320

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.