Evidence map›Paper›PMID 34009538›Full record

ArticleFunctional & integrative genomics2021

Evaluation of the differences between biofilm and planktonic Brucella abortus via metabolomics and proteomics.

Taishan Tang, Ye Xu, Jianfeng Wang, Xiao Tan, Xiaona Zhao, Ping Zhou, Fande Kong, Changqing Zhu, Chengping Lu, Huixing Lin

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Optimization of the first extraction protocol for metabolomic studies of Brucella abortus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  4. Article
  5. The Flagellar Transcriptional Regulator FtcR ControlsInternational journal of molecular sciences · 2022
    Article
  6. Foods (Basel, Switzerland) · 2022
    Article
  7. Cadaverine Is a Switch in the Lysine Degradation Pathway inFrontiers in cellular and infection microbiology · 2022
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Taishan TangAnimal, Plant and Food Inspection Center, Nanjing Customs District, Nanjing, Jiangsu Province, 210001, People's Republic of China.
Ye XuLianyungang Customs Comprehensive Technology Center, Nanjing Customs District, Lianyungang, Jiangsu, 222000, People's Republic of China.
Jianfeng WangTechnical Centre of Ningbo Customs, Ningbo Customs District, Ningbo, Zhejiang Province, 315100, People's Republic of China.
Xiao TanAnimal, Plant and Food Inspection Center, Nanjing Customs District, Nanjing, Jiangsu Province, 210001, People's Republic of China.
Xiaona ZhaoAnimal, Plant and Food Inspection Center, Nanjing Customs District, Nanjing, Jiangsu Province, 210001, People's Republic of China.
Ping ZhouAnimal, Plant and Food Inspection Center, Nanjing Customs District, Nanjing, Jiangsu Province, 210001, People's Republic of China.
Fande KongTechnical Center, Xiamen Customs District, Xiamen, Fujian, 361026, People's Republic of China.
Changqing ZhuSchool of Food Science, Nanjing Xiaozhuang University, Nanjing, Jiangsu Province, 211171, People's Republic of China.
Chengping LuMOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, 1 Weigang, Xuanwu, Nanjing, Jiangsu Province, 210095, People's Republic of China. lucp@njau.edu.cn.ORCID http://orcid.org/0000-0002-4562-3194
Huixing LinMOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, 1 Weigang, Xuanwu, Nanjing, Jiangsu Province, 210095, People's Republic of China.
Shanghai Customs College · CNNanjing Agricultural University · CNNanjing Xiaozhuang University · CNXiamen Tobacco Industry (China) · CN

Funding

National Natural Science Foundation of China 31702278the Fundamental Research Funds for the Central Universities KYDS201801, KJQN201826the Science Foundation of General Administration of Customs of the People's Republic China 2019HK018the Science Foundation of General Administration of Quality Supervision, Inspection and Quarantine of the People's Republic China 2008IK004
6 · The paper itself

Abstract

This study analyzed the difference between biofilm and planktonic Brucella abortus using metabolomics and proteomics. Brucella abortus was cultured in different media to induce Brucella abortus biofilm formation and planktonic cells, followed by metabolomics and proteomics analyses for these two samples. Significant differential metabolites were identified, followed by KEGG pathway analysis. Differentially expressed proteins were identified, followed by subcellular localization, GO annotation, and KEGG pathway enrichment. Additionally, a correlation analysis of metabolomics and proteomics was performed. Metabolomics analysis showed 7682 positive and 4433 negative metabolites, including 188 positive and 117 negative significant differential metabolites. These differential metabolites were enriched in fatty acid/unsaturated fatty acid biosynthesis and linoleic acid metabolism. Proteomics analysis revealed 1759 proteins, including 486 differentially expressed proteins, which were enriched in various metabolic and degradation-related pathways. Subcellular localization showed that 74.3% of the differential proteins were cytoplasmic proteins. Correlation analysis showed that 1-palmitoyl-2-oleoyl-phosphatidylglycerol had the most significant correlations with proteins, followed by cytosine. Both metabolites correlated with the protein Q57EI7 (RbsB-1, ribose ABC transporter). One common pathway, fatty acid biosynthesis, was identified by both proteomics and metabolomics analyses that involved the metabolites, oleic acid, and protein Q57DK3 (biotin carboxylase). There were metabolomic and proteomic differences between Brucella abortus biofilm and planktonic cells, and these results provide novel insights into the biofilm-forming process of Brucella abortus.

Indexed as

BiofilmsBrucella abortusMetabolomicsPlanktonProteomicsATP-Binding Cassette TransportersFatty AcidsATP-Binding Cassette TransportersFatty AcidsBiofilmBioinformatics analysisBrucella abortusMetabolomicsProteomics

Identifiers

PMID34009538
OpenAlexW3160404832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.