Evidence map›Paper›PMID 34009375›Full record

ArticleNucleic acids research2021

miRTargetLink 2.0-interactive miRNA target gene and target pathway networks.

Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
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  9. Folinic Acid Improves Healing of Diabetic Foot Ulcers.Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society
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  14. Regulation of PSAT1 and PHGDH by m6A in endocrine-resistant breast cancer cells.Biochimica et biophysica acta. Molecular basis of disease · 2026
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88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Fabian KernChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.ORCID 0000-0002-8223-3750
Ernesto Aparicio-PuertaChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.
Yongping LiChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.
Tobias FehlmannChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.ORCID 0000-0003-1967-2918
Tim KehlCenter for Bioinformatics, Saarland Informatics Campus, Saarland University, 66123 Saarbrücken, Germany.ORCID 0000-0002-9523-7566
Viktoria WagnerChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.
Kamalika RayChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.
Nicole LudwigCenter for Human and Molecular Biology, Institute of Human Genetics, Saarland University, 66421 Homburg, Germany.
Hans-Peter LenhofCenter for Bioinformatics, Saarland Informatics Campus, Saarland University, 66123 Saarbrücken, Germany.
Eckart MeeseCenter for Human and Molecular Biology, Institute of Human Genetics, Saarland University, 66421 Homburg, Germany.
Andreas KellerChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.ORCID 0000-0002-5361-0895

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Which genes, gene sets or pathways are regulated by certain miRNAs? Which miRNAs regulate a particular target gene or target pathway in a certain physiological context? Answering such common research questions can be time consuming and labor intensive. Especially for researchers without computational experience, the integration of different data sources, selection of the right parameters and concise visualization can be demanding. A comprehensive analysis should be central to present adequate answers to complex biological questions. With miRTargetLink 2.0, we develop an all-in-one solution for human, mouse and rat miRNA networks. Users input in the unidirectional search mode either a single gene, gene set or gene pathway, alternatively a single miRNA, a set of miRNAs or an miRNA pathway. Moreover, genes and miRNAs can jointly be provided to the tool in the bidirectional search mode. For the selected entities, interaction graphs are generated from different data sources and dynamically presented. Connected application programming interfaces (APIs) to the tailored enrichment tools miEAA and GeneTrail facilitate downstream analysis of pathways and context-annotated categories of network nodes. MiRTargetLink 2.0 is freely accessible at https://www.ccb.uni-saarland.de/mirtargetlink2.

Indexed as

Gene Expression RegulationSoftwareAnimalsAniridiaGene Regulatory NetworksHumansMiceMicroRNAsRatsMicroRNAs

Identifiers

PMID34009375
PMCPMC8262750

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.