Evidence map›Paper›PMID 34009300›Full record

ArticleGenome biology and evolution2021

Genomic Analyses of Unveil Helmeted Guinea Fowl (Numida meleagris) Domestication in West Africa.

Quan-Kuan Shen, Min-Sheng Peng, Adeniyi C Adeola, Ling Kui, Shengchang Duan, Yong-Wang Miao, Nada M Eltayeb, Jacqueline K Lichoti, Newton O Otecko, Maria Giuseppina Strillacci and 21 more

Erratum issuedAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Life history traits and cancer prevalence in birds.Evolution, medicine, and public health · 2024
    Article
  6. Life history and cancer in birds: clutch size predicts cancer.bioRxiv : the preprint server for biology · 2023
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors.

Quan-Kuan ShenState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Min-Sheng PengState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Adeniyi C AdeolaState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Ling KuiDana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA.
Shengchang DuanNowbio Biotechnology Company, Kunming, China.
Yong-Wang MiaoFaculty of Animal Science and Technology, Yunnan Agricultural University, Kunming, China.
Nada M EltayebDepartment of Animal breeding and Reproduction Technology, College of Animal Production, University of Bahri, Khartoum, Sudan.
Jacqueline K LichotiState Department of Livestock, Ministry of Agriculture Livestock Fisheries and Irrigation, Nairobi, Kenya.
Newton O OteckoState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Maria Giuseppina StrillacciDepartment of Veterinary Medicine, Università degli Studi di Milano, Italy.ORCID 0000-0002-8972-1730
Erica GorlaDepartment of Veterinary Medicine, Università degli Studi di Milano, Italy.
Alessandro BagnatoDepartment of Veterinary Medicine, Università degli Studi di Milano, Italy.
Olaogun S CharlesDepartment of Veterinary Medicine, University of Ibadan, Nigeria.
Oscar J SankeTaraba State Ministry of Agriculture and Natural Resources, Jalingo, Nigeria.
Philip M DawudaDepartment of Veterinary Surgery and Theriogenology, College of Veterinary Medicine, University of Agriculture, Makurdi, Nigeria.
Agboola O OkeyoyinNational Park Service Headquarter, Federal Capital Territory, Abuja, Nigeria.
John MusinaDepartment of Zoology, National Museums of Kenya, Nairobi, Kenya.
Peter NjorogeDepartment of Zoology, National Museums of Kenya, Nairobi, Kenya.
Bernard AgwandaDepartment of Zoology, National Museums of Kenya, Nairobi, Kenya.
Szilvia KuszaCentre for Agricultural Genomics and Biotechnology, University of Debrecen, Debrecen, Hungary.
Hojjat Asadollahpour NanaeiDepartment of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Iran.
Rana PedarDepartment of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Iran.
Ming-Min XuState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Yuan DuNowbio Biotechnology Company, Kunming, China.
Lotanna M NnejiState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.
Robert W MurphyCentre for Biodiversity and Conservation Biology, Royal Ontario Museum, Toronto, Ontario, Canada.
Ming-Shan WangHoward Hughes Medical Institute, University of California Santa Cruz, California, USA.
Ali EsmailizadehState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.ORCID 0000-0003-0986-6639
Yang DongCollege of Biological Big Data, Yunnan Agriculture University, Kunming, China.
Sheila C OmmehDepartment of Zoology, National Museums of Kenya, Nairobi, Kenya.
Ya-Ping ZhangState Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Domestication of the helmeted guinea fowl (HGF; Numida meleagris) in Africa remains elusive. Here we report a high-quality de novo genome assembly for domestic HGF generated by long- and short-reads sequencing together with optical and chromatin interaction mapping. Using this assembly as the reference, we performed population genomic analyses for newly sequenced whole-genomes for 129 birds from Africa, Asia, and Europe, including domestic animals (n = 89), wild progenitors (n = 34), and their closely related wild species (n = 6). Our results reveal domestication of HGF in West Africa around 1,300-5,500 years ago. Scanning for selective signals characterized the functional genes in behavior and locomotion changes involved in domestication of HGF. The pleiotropy and linkage in genes affecting plumage color and fertility were revealed in the recent breeding of Italian domestic HGF. In addition to presenting a missing piece to the jigsaw puzzle of domestication in poultry, our study provides valuable genetic resources for researchers and breeders to improve production in this species.

Indexed as

DomesticationGenomePhylogenyAnimalsGalliformesGenetic VariationMalePhylogeographySelection, GeneticAfricabreeddomesticationgenomeguineafowlselection

Identifiers

PMID34009300
PMCPMC8214406

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.