Evidence map›Paper›PMID 34007039›Full record

ArticleNature plants2021

Two types of bHLH transcription factor determine the competence of the pericycle for lateral root initiation.

Ye Zhang, Nobutaka Mitsuda, Takeshi Yoshizumi, Yoko Horii, Yoshimi Oshima, Masaru Ohme-Takagi, Minami Matsui, Tatsuo Kakimoto

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 77 citations in OpenAlex.

  1. Review
  2. Article
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  6. Article
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  15. Insights into the genetic architecture of the reciprocal interspecific hybrids derived fromMolecular breeding : new strategies in plant improvement · 2024
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Ye ZhangDepartment of Biology, Graduate School of Science, Osaka University, Osaka, Japan.
Nobutaka MitsudaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.ORCID http://orcid.org/0000-0001-5689-3678
Takeshi YoshizumiRIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Yoko HoriiRIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Yoshimi OshimaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Masaru Ohme-TakagiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Minami MatsuiRIKEN Center for Sustainable Resource Science, Yokohama, Japan.ORCID http://orcid.org/0000-0001-5162-2668
Tatsuo KakimotoDepartment of Biology, Graduate School of Science, Osaka University, Osaka, Japan. kakimoto@bio.sci.osaka-u.ac.jp.ORCID http://orcid.org/0000-0002-5602-2730
National Institute of Advanced Industrial Science and Technology · JPRIKEN Center for Sustainable Resource Science · JPNara Institute of Science and Technology · JPOsaka City University · JPSaitama University · JPTakasaki University of Health and Welfare · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular basis of the competence of the pericycle cell to initiate lateral root primordium formation is totally unknown. Here, we report that in Arabidopsis, two types of basic helix-loop-helix (bHLH) transcription factors, named PERICYCLE FACTOR TYPE-A (PFA) proteins and PERICYCLE FACTOR TYPE-B (PFB) proteins, govern the competence of pericycle cells to initiate lateral root primordium formation. Overexpression of PFA genes confers hallmark pericycle characteristics, including specific marker gene expression and auxin-induced cell division, and multiple loss-of-function mutations in PFA genes or the repression of PFB target genes results in the loss of this specific pericycle function. PFA and PFB proteins physically interact and are under mutual- and self-regulation, forming a positive feedback loop. This study unveils the transcriptional regulatory system that determines pericycle participation in lateral root initiation.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantPlant RootsArabidopsis ProteinsBasic Helix-Loop-Helix Proteins

Identifiers

PMID34007039
OpenAlexW3160617099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.