Evidence map›Paper›PMID 34004258›Full record

ArticleThe Journal of allergy and clinical immunology2022

Comprehensive analysis of ADA2 genetic variants and estimation of carrier frequency driven by a function-based approach.

Hyuk Jee, Zhengping Huang, Samantha Baxter, Yuelong Huang, Maria L Taylor, Lauren A Henderson, Sofia Rosenzweig, Aman Sharma, Eugene P Chambers, Michael S Hershfield and 6 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Decoding neurovascular signatures: advanced imaging insights in DADA2-Related Cerebral Microangiopathy.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Getting to know adenosine deaminase 2 deficiency inside and out.The Journal of allergy and clinical immunology · 2025
    Review
  16. Article
  17. Vasculitis in Children.Turkish archives of pediatrics · 2024
    Review
  18. Review
  19. Human ADA2 Deficiency: Ten Years Later.Current allergy and asthma reports · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 4 countries.

Hyuk JeeDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Zhengping HuangDepartment of Rheumatology and Immunology, Guangdong Second Provincial General Hospital, Guangzhou, China; Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass.
Samantha BaxterCenter for Mendelian Genomics, The Broad Institute of MIT and Harvard, Cambridge, Mass.
Yuelong HuangDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass.
Maria L TaylorDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Lauren A HendersonDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Sofia RosenzweigInflammatory Disease Section, National Human Genome Research Institute, Bethesda, Md.
Aman SharmaClinical Immunology and Rheumatology Services, Department of Internal Medicine, Postgraduate Institute of Medical Education and Research, Chandigarh, India.
Eugene P ChambersDepartment of Surgery, Vanderbilt University Medical Center, Nashville, Tenn; DADA2 Foundation, Nashville, Tenn.
Michael S HershfieldDepartment of Medicine and Biochemistry, Duke University School of Medicine, Durham, NC.
Qing ZhouLife Sciences Institute, Zhejiang University, Zhejiang, China.
Fatma DedeogluDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Ivona AksentijevichInflammatory Disease Section, National Human Genome Research Institute, Bethesda, Md.
Peter A NigrovicDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass; Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass.
Anne O'Donnell-LuriaCenter for Mendelian Genomics, The Broad Institute of MIT and Harvard, Cambridge, Mass; Division of Genetics and Genomics, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Pui Y LeeDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass; Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass. Electronic address: pui.lee@childrens.harvard.edu.
Boston Children's Hospital · USBrigham and Women's Hospital · USBroad Institute · USNational Human Genome Research Institute · USDuke University · USHarvard University · USPost Graduate Institute of Medical Education and Research · INVanderbilt University Medical Center · USZhejiang University · CN

Funding

Genetics, Pathophysiology, and Treatment of Recessive Autoinflammatory DiseasesZIAHG200372 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI KASTNER, DANIEL · 2011 to 2025
$27.2M
Joint Biology Consortium Resource-based CenterP30AR070253 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic, Jeffrey Andrew Sparks · 2016 to 2026
$9.4M
Ly6 family members in neutrophil biologyR01AR065538 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI NIGROVIC, PETER A · 2014 to 2024
$4.0M
Bridging the gap between GWAS and mechanism in JIAR01AR073201 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic · 2019 to 2026
$3.2M
T resident memory cells in arthritisR01AR075906 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI NIGROVIC, PETER A · 2019 to 2023
$2.1M
Metabolic control of monocyte development and function by amino acidsK08AR074562 · NIAMS · BOSTON CHILDREN'S HOSPITAL · PI LEE, PUI YUEN · 2019 to 2023
$868k
NIAMS NIH HHS K08 AR074562NIAMS NIH HHS P30 AR070253NIAMS NIH HHS R01 AR065538NIAMS NIH HHS R01 AR073201NIAMS NIH HHS R01 AR075906
6 · The paper itself

Abstract

backgroundDeficiency of adenosine deaminase 2 (DADA2) is an autoinflammatory disease caused by deleterious ADA2 variants. The frequency of these variants in the general population, and hence the expected disease prevalence, remain unknown.

objectiveWe aimed to characterize the functional impact and carrier frequency of ADA2 variants.

methodsWe performed functional studies and in silico analysis on 163 ADA2 variants, including DADA2-associated variants and population variants identified in the Genome Aggregation Database. We estimated the carrier rate using the aggregate frequency of deleterious variants.

resultsFunctional studies of ADA2 variants revealed that 77 (91%) of 85 of DADA2-associated variants reduced ADA2 enzymatic function by >75%. Analysis of 100 ADA2 variants in the database showed a full spectrum of impact on ADA2 function, rather than a dichotomy of benign versus deleterious variants. We found several in silico algorithms that effectively predicted the impact of ADA2 variants with high sensitivity and specificity, and confirmed a correlation between the residual function of ADA2 variants in vitro and the plasma ADA2 activity of individuals carrying these variants (n = 45; r = 0.649; P < .0001). Using <25% residual enzymatic activity as the cutoff to define potential pathogenicity, integration of our results with the database population data revealed an estimated carrier frequency of at least 1 in 236 individuals, corresponding to an expected DADA2 disease prevalence of ~1 in 222,000 individuals.

conclusionsFunctional annotation guides the interpretation of ADA2 variants to create a framework that enables estimation of DADA2 carrier frequency and disease prevalence.

Indexed as

Adenosine DeaminaseAlgorithmsGenetic Predisposition to DiseaseGenetic VariationHEK293 CellsHumansImmune System DiseasesIntercellular Signaling Peptides and ProteinsADA2 protein, humanAdenosine DeaminaseIntercellular Signaling Peptides and ProteinsADA2 variantsAdenosine deaminase 2carrier frequencyDADA2disease prevalence

Identifiers

PMID34004258
PMCPMC8591146
OpenAlexW3160334155

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.