Evidence map›Paper›PMID 34004004›Full record

ArticleTranslational vision science & technology2021

Computational Model-Based Estimation of Mouse Eyeball Structure From Two-Dimensional Flatmount Microscopy Images.

Hongxiao Li, Hanyi Yu, Yong-Kyu Kim, Fusheng Wang, George Teodoro, Yi Jiang, John M Nickerson, Jun Kong

Open access · goldAbstract read
In one paragraph

Article in Translational vision science & technology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Hongxiao LiDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
Hanyi YuDepartment of Computer Science, Emory University, Atlanta, GA, USA.
Yong-Kyu KimDepartment of Ophthalmology, Hallym University College of Medicine, Kangdong Sacred Heart Hospital, Seoul, South Korea.
Fusheng WangDepartment of Computer Science, Stony Brook University, Stony Brook, NY, USA.
George TeodoroDepartment of Computer Science, Federal University of Minas Gerais, Belo Horizonte, Brazil.
Yi JiangDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
John M NickersonOphthalmology Department, Emory University, Atlanta, GA, USA.
Jun KongDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
Emory University · USGeorgia State University · USChinese Academy of Medical Sciences & Peking Union Medical College · CNHallym University · KRStony Brook University · USUniversidade Federal de Minas Gerais · BR

Funding

P30-Core Grant for Vision Research Core CP30EY006360 · NEI · EMORY UNIVERSITY · PI PARDUE, MACHELLE T. · 1986 to 2025
$15.3M
VIsion Science Training in AtlantaT32EY007092 · NEI · EMORY UNIVERSITY · PI Machelle T. Pardue · 1985 to 2026
$4.6M
Ocular Growth, Emmetropia, and Interphotoreceptor Retinoid-Binding Protein (IRBP)R01EY021592 · NEI · EMORY UNIVERSITY · PI BOATRIGHT, JEFFREY H, IUVONE, P MICHAEL · 2013 to 2021
$3.3M
The RPE and Recovery of the Blood Retina BarrierR01EY028450 · NEI · EMORY UNIVERSITY · PI BOATRIGHT, JEFFREY H, GROSSNIKLAUS, HANS E. · 2018 to 2022
$2.4M
Exercise-induced Retinal NeuroprotectionR01EY028859 · NEI · EMORY UNIVERSITY · PI BOATRIGHT, JEFFREY H, PARDUE, MACHELLE T. · 2018 to 2021
$2.0M
Computational pathology software for integrative cancer research with three-dimensional digital slidesU01CA242936 · NCI · GEORGIA STATE UNIVERSITY · PI KONG, JUN, WANG, FUSHENG · 2019 to 2021
$1.1M
Quantitative Analysis of GBM Invasion Mechanisms with New Imaging ProtocolK25CA181503 · NCI · GEORGIA STATE UNIVERSITY · PI KONG, JUN · 2014 to 2018
$592k
Bridging animal and human models of exercise-induced visual rehabilitationI21RX001924 · VA · VETERANS HEALTH ADMINISTRATION · PI BOATRIGHT, JEFFREY H · 2015 to 2017
–
A TrkB Activator for Treatment of GlaucomaI01RX002806 · VA · VETERANS HEALTH ADMINISTRATION · PI BOATRIGHT, JEFFREY H · 2019 to 2024
–
Ocular Sequelae and Intervention in a Rat Model of Blast Overpressure PolytraumaI01BX002439 · VA · VA WESTERN NEW YORK HEALTHCARE SYSTEM · PI FLIESLER, STEVEN J., PARDUE, MACHELLE T. · 2015 to 2023
–
BLRD VA I01 BX002439NCI NIH HHS K25 CA181503NCI NIH HHS U01 CA242936NEI NIH HHS P30 EY006360NEI NIH HHS R01 EY021592NEI NIH HHS R01 EY028450NEI NIH HHS R01 EY028859NEI NIH HHS T32 EY007092RRD VA I01 RX002806RRD VA I21 RX001924
6 · The paper itself

Abstract

Purpose: Retinal pigment epithelial (RPE) cells serve as a supporter for the metabolism and visual function of photoreceptors and a barrier for photoreceptor protection. Morphology dynamics, spatial organization, distribution density, and growth patterns of RPE cells are important for further research on these RPE main functions. To enable such investigations within the authentic eyeball structure, a new method for estimating the three-dimensional (3D) eyeball sphere from two-dimensional tissue flatmount microscopy images was investigated. Methods: An error-correction term was formulated to compensate for the reconstruction error as a result of tissue distortions. The effect of the tissue-distortion error was evaluated by excluding partial data points from the low- and high-latitude zones. The error-correction parameter was learned automatically using a set of samples with the ground truth eyeball diameters measured with noncontact light-emitting diode micrometry at submicron accuracy and precision. Results: The analysis showed that the error-correction term in the reconstruction model is a valid method for modeling tissue distortions in the tissue flatmount preparation steps. With the error-correction model, the average relative error of the estimated eyeball diameter was reduced from 14% to 5%, and the absolute error was reduced from 0.22 to 0.03 mm. Conclusions: A new method for enabling RPE morphometry analysis with respect to locations on an eyeball sphere was created, an important step in increasing RPE research and eye disease diagnosis. Translational Relevance: This method enables one to derive RPE cell information from the 3D eyeball surface and helps characterize eyeball volume growth patterns under diseased conditions.

Indexed as

EyeMicroscopyAnimalsMice

Identifiers

PMID34004004
PMCPMC8088229
OpenAlexW3159281952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.