Evidence map›Paper›PMID 34003795›Full record

ArticleJCI insight2021

Deficiency of histone lysine methyltransferase SETDB2 in hematopoietic cells promotes vascular inflammation and accelerates atherosclerosis.

Xinbo Zhang, Jonathan Sun, Alberto Canfrán-Duque, Binod Aryal, George Tellides, Ying Ju Chang, Yajaira Suárez, Timothy F Osborne, Carlos Fernández-Hernando

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Xinbo ZhangVascular Biology and Therapeutics Program.
Jonathan SunVascular Biology and Therapeutics Program.
Alberto Canfrán-DuqueVascular Biology and Therapeutics Program.
Binod AryalVascular Biology and Therapeutics Program.
George TellidesVascular Biology and Therapeutics Program.
Ying Ju ChangDepartment of Medicine and.
Yajaira SuárezVascular Biology and Therapeutics Program.
Timothy F OsborneDepartment of Medicine and.
Carlos Fernández-HernandoVascular Biology and Therapeutics Program.
Center for Vascular Biology Research · USJohns Hopkins University · USYale University · US

Funding

INSTITUTIONAL NATIONAL RESEARCH SERVICE AWARDT32GM007324 · NIGMS · YALE UNIVERSITY · PI BENNETT, ANTON M · 1987 to 2022
$6.2M
Novel insights into the molecular and cellular mechanism regulating lipid metabolism and atherosclerosisR35HL135820 · NHLBI · YALE UNIVERSITY · PI FERNANDEZ HERNANDO, CARLOS · 2017 to 2023
$6.0M
Insights into the molecular mechanisms regulating vascular and immune metabolism in vascular diseasesR35HL155988 · NHLBI · YALE UNIVERSITY · PI Yajaira Suarez · 2021 to 2026
$5.6M
Dual-specificity phosphatase action in muscle diseaseR01AR080152 · NIAMS · YALE UNIVERSITY · PI Anton M Bennett · 2022 to 2026
$2.5M
A Glucocorticoid Receptor-SETDB2 Co-Regulated Liver Metabolic Gene ProgramR01DK124343 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI OSBORNE, TIMOTHY F · 2021 to 2024
$2.1M
NHLBI NIH HHS R35 HL135820NHLBI NIH HHS R35 HL155988NIAMS NIH HHS R01 AR080152NIDDK NIH HHS R01 DK124343NIGMS NIH HHS T32 GM007324
6 · The paper itself

Abstract

Epigenetic modifications of the genome, including DNA methylation, histone methylation/acetylation, and noncoding RNAs, have been reported to play a fundamental role in regulating immune response during the progression of atherosclerosis. SETDB2 is a member of the KMT1 family of lysine methyltransferases, and members of this family typically methylate histone H3 Lys9 (H3K9), an epigenetic mark associated with gene silencing. Previous studies have shown that SETDB2 is involved in innate and adaptive immunity, the proinflammatory response, and hepatic lipid metabolism. Here, we report that expression of SETDB2 is markedly upregulated in human and murine atherosclerotic lesions. Upregulation of SETDB2 was observed in proinflammatory M1 but not antiinflammatory M2 macrophages. Notably, we found that genetic deletion of SETDB2 in hematopoietic cells promoted vascular inflammation and enhanced the progression of atherosclerosis in BM transfer studies in Ldlr-knockout mice. Single-cell RNA-Seq analysis in isolated CD45+ cells from atherosclerotic plaques from mice transplanted with SETDB2-deficient BM revealed a significant increase in monocyte population and enhanced expression of genes involved in inflammation and myeloid cell recruitment. Additionally, we found that loss of SETDB2 in hematopoietic cells was associated with macrophage accumulation in atherosclerotic lesions and attenuated efferocytosis. Overall, these studies identify SETDB2 as an important inflammatory cell regulator that controls macrophage activation in atherosclerotic plaques.

Indexed as

AtherosclerosisHistone-Lysine N-MethyltransferaseInflammationMacrophagesAnimalsCells, CulturedCytokinesHumansMaleMicePlaque, AtheroscleroticTranscriptomeUp-RegulationCytokinesHistone-Lysine N-MethyltransferaseSETDB2 protein, humanSetdb2 protein, mouseAtherosclerosisInflammationMacrophagesVascular Biology

Identifiers

PMID34003795
PMCPMC8262461
OpenAlexW3160956849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.