Evidence map›Paper›PMID 34003359›Full record

ArticleArchives of virology2021

Phylogenetic analysis of classical swine fever virus isolates from China.

Xiaofu Zhu, Mingjie Liu, Xujin Wu, Wentao Ma, Xuanduo Zhao

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Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xiaofu Zhu *Key Laboratory of Animal Epidemic Disease Diagnostic Laboratory of Molecular Biology in Xianyang City, Xianyang Vocational Technical College, Xianyang, 712000, Shaanxi, China. xfu_zhu@outlook.com.ORCID http://orcid.org/0000-0001-7146-2139
Mingjie Liu *College of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xujin WuKey Laboratory of Animal Epidemic Disease Diagnostic Laboratory of Molecular Biology in Xianyang City, Xianyang Vocational Technical College, Xianyang, 712000, Shaanxi, China.
Wentao MaCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xuanduo ZhaoYangling Bodeyue Biotechnology Co., Ltd., Yangling, 712100, Shaanxi, China.

Funding

Xianyang Vocational Technical College (CN) 2019k02-63
6 · The paper itself

Abstract

Classical swine fever (CSF), caused by classical swine fever virus (CSFV), is a severe disease that causes huge economic losses in the swine industry worldwide. In China, CSF has been under control due to extensive vaccination since 1954. However, there are still sporadic CSF outbreaks in China. Here, we isolated 27 CSFV strains from three Chinese provinces (Shaanxi, Gansu, and Ningxia) from 2011 to 2018. Phylogenetic analysis based on the full-length envelope glycoprotein E2 coding region revealed that 25 out of 27 CSFV isolates clustered within subgroups 2.1 and 2.2, while two strains from Gansu belonged to subgroup 1.1. The sequence identity among these 27 isolates varied from 79.3% to 99.8% (nucleotides) and from 83.1% to 99.7% (amino acids). Further analysis based on the E2 amino acid sequences showed that these new isolates have consistent amino acid substitutions, including R31K and N34S.

Indexed as

Amino Acid SubstitutionAmino Acid SequenceAnimalsChinaClassical Swine FeverClassical Swine Fever VirusEvolution, MolecularGenotypePhylogenyReverse Transcriptase Polymerase Chain ReactionSequence AlignmentSwineViral Envelope Proteinsglycoprotein E2, classical swine fever virusViral Envelope Proteins

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.